Protein : Qrob_P0535770.2 Q. robur
Protein Identifier  ? Qrob_P0535770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG1433//KOG1434 - DNA repair protein RAD51/RHP55 [Replication recombination and repair]. // Meiotic recombination protein Dmc1 [Energy production and conversion Replication recombination and repair]. Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 421  
Kegg Orthology  K03553
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0009432 SOS response An error-prone process for repairing damaged microbial DNA.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037642 1 420 + 420 none 100.00 420 83.10 0.0 RecA DNA recombination family protein
blastp_kegg lcl|vvi:100257827 1 420 + 420 Gaps:3 100.00 421 79.81 0.0 DNA repair protein recA homolog 3 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0006s15100g 1 420 + 420 Gaps:2 100.00 418 78.95 0.0 POPTRDRAFT_717577 recA family protein
blastp_kegg lcl|cit:102614724 1 420 + 420 Gaps:13 100.00 427 80.09 0.0 DNA repair protein recA homolog 3 mitochondrial-like
blastp_kegg lcl|gmx:100781271 1 420 + 420 Gaps:15 94.34 459 75.98 0.0 DNA repair protein recA homolog 3 mitochondrial-like
blastp_kegg lcl|mtr:MTR_2g039670 1 420 + 420 Gaps:8 100.00 424 75.24 0.0 RecA
blastp_kegg lcl|pop:POPTR_0018s06880g 1 420 + 420 Gaps:5 99.52 417 78.80 0.0 hypothetical protein
blastp_kegg lcl|pmum:103340698 1 418 + 418 Gaps:5 99.52 415 79.90 0.0 DNA repair protein recA homolog 3 mitochondrial
blastp_kegg lcl|cam:101506562 1 420 + 420 Gaps:11 100.00 429 75.76 0.0 DNA repair protein recA homolog 3 mitochondrial-like
blastp_kegg lcl|mdm:103400817 1 420 + 420 none 100.00 420 77.86 0.0 DNA repair protein recA homolog 3 mitochondrial
blastp_pdb 2zrp_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2zro_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2zrn_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2zrm_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2zr7_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2ofo_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2oes_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2oep_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2oe2_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_pdb 2odw_A 58 382 + 325 Gaps:5 92.26 349 54.97 1e-122 mol:protein length:349 Protein recA
blastp_uniprot_sprot sp|Q9ZUP2|RECA3_ARATH 1 413 + 413 Gaps:1 96.28 430 76.09 0.0 DNA repair protein recA homolog 3 mitochondrial OS Arabidopsis thaliana GN At2g19490 PE 2 SV 2
blastp_uniprot_sprot sp|Q31F89|RECA_THICR 58 397 + 340 Gaps:4 97.41 347 57.10 2e-134 Protein RecA OS Thiomicrospira crunogena (strain XCL-2) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q0AHX4|RECA_NITEC 57 389 + 333 Gaps:4 96.50 343 57.40 1e-131 Protein RecA OS Nitrosomonas eutropha (strain C91) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q5QUB8|RECA_IDILO 61 395 + 335 Gaps:10 87.90 372 60.24 8e-131 Protein RecA OS Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C1D4J2|RECA_LARHH 56 379 + 324 Gaps:4 90.96 354 58.07 5e-130 Protein RecA OS Laribacter hongkongensis (strain HLHK9) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q5ZUJ7|RECA_LEGPH 58 383 + 326 Gaps:4 93.10 348 57.10 1e-129 Protein RecA OS Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|A5ICV8|RECA_LEGPC 58 383 + 326 Gaps:4 93.10 348 57.10 1e-129 Protein RecA OS Legionella pneumophila (strain Corby) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q5X4B5|RECA_LEGPA 58 383 + 326 Gaps:4 93.10 348 57.10 1e-129 Protein RecA OS Legionella pneumophila (strain Paris) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q5WVQ0|RECA_LEGPL 58 383 + 326 Gaps:4 93.10 348 57.10 1e-129 Protein RecA OS Legionella pneumophila (strain Lens) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|B9JFS7|RECA_AGRRK 52 381 + 330 Gaps:4 90.86 361 57.62 2e-129 Protein RecA OS Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN recA PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 89 324 236 G3DSA:3.40.50.300 none none IPR027417
SMART 111 285 175 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Hamap 58 385 328 MF_00268 none Protein RecA [recA]. IPR013765
ProSiteProfiles 89 248 160 PS50162 none RecA family profile 1. IPR020588
ProSitePatterns 270 278 9 PS00321 none recA signature. IPR020584
SUPERFAMILY 325 380 56 SSF54752 none none IPR023400
SUPERFAMILY 61 324 264 SSF52540 none none IPR027417
ProSiteProfiles 258 329 72 PS50163 none RecA family profile 2. IPR020587
PRINTS 147 176 30 PR00142 none RecA protein signature IPR013765
PRINTS 219 248 30 PR00142 none RecA protein signature IPR013765
PRINTS 300 329 30 PR00142 none RecA protein signature IPR013765
PRINTS 267 295 29 PR00142 none RecA protein signature IPR013765
PRINTS 181 210 30 PR00142 none RecA protein signature IPR013765
PRINTS 353 370 18 PR00142 none RecA protein signature IPR013765
PANTHER 57 345 289 PTHR22942:SF28 none none none
Pfam 61 382 322 PF00154 none recA bacterial DNA recombination protein IPR013765
PANTHER 57 345 289 PTHR22942 none none none
TIGRFAM 58 380 323 TIGR02012 none tigrfam_recA: protein RecA IPR013765
Gene3D 326 382 57 G3DSA:3.30.250.10 none none IPR023400

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting