Protein : Qrob_P0533000.2 Q. robur

Protein Identifier  ? Qrob_P0533000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) 3.2.2.20 - DNA-3-methyladenine glycosylase I. Code Enzyme  EC:3.2.2.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 332  
Kegg Orthology  K01246

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006284 base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO:0008725 DNA-3-methyladenine glycosylase activity Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_033995 1 330 + 330 Gaps:20 98.80 332 73.17 5e-150 DNA-3-methyladenine glycosylase putative
blastp_kegg lcl|cic:CICLE_v10001864mg 4 321 + 318 Gaps:9 97.81 320 74.12 2e-148 hypothetical protein
blastp_kegg lcl|pmum:103320814 1 328 + 328 Gaps:16 98.48 329 72.53 2e-146 uncharacterized LOC103320814
blastp_kegg lcl|vvi:100250686 1 331 + 331 Gaps:32 98.10 315 72.17 5e-146 probable GMP synthase [glutamine-hydrolyzing]-like
blastp_kegg lcl|pop:POPTR_0014s04120g 13 331 + 319 Gaps:16 93.35 331 71.84 2e-145 hypothetical protein
blastp_kegg lcl|pxb:103955435 1 328 + 328 Gaps:18 97.87 329 71.43 2e-144 uncharacterized LOC103955435
blastp_kegg lcl|pper:PRUPE_ppa026563mg 1 319 + 319 Gaps:13 99.05 315 72.44 2e-143 hypothetical protein
blastp_kegg lcl|mdm:103440512 1 326 + 326 Gaps:19 97.27 330 70.72 8e-143 uncharacterized LOC103440512
blastp_kegg lcl|pvu:PHAVU_009G056500g 11 325 + 315 Gaps:13 97.50 320 66.67 4e-141 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1593770 1 331 + 331 Gaps:18 99.11 336 66.97 7e-141 DNA-3-methyladenine glycosylase putative (EC:3.2.2.20)
blastp_pdb 1p7m_A 120 302 + 183 Gaps:2 96.79 187 39.78 3e-47 mol:protein length:187 DNA-3-methyladenine glycosylase I
blastp_pdb 1nku_A 120 302 + 183 Gaps:2 96.79 187 39.78 3e-47 mol:protein length:187 3-Methyladenine Dna Glycosylase I (TAG)
blastp_pdb 1lmz_A 120 302 + 183 Gaps:2 96.79 187 39.78 3e-47 mol:protein length:187 3-methyladenine DNA glycosylase I (TAG)
blastp_pdb 2ofi_A 120 300 + 181 Gaps:2 97.28 184 40.78 1e-46 mol:protein length:184 3-methyladenine DNA glycosylase I constituti
blastp_pdb 2ofk_B 120 300 + 181 Gaps:2 97.81 183 40.78 2e-46 mol:protein length:183 3-methyladenine DNA glycosylase I constituti
blastp_pdb 2ofk_A 120 300 + 181 Gaps:2 97.81 183 40.78 2e-46 mol:protein length:183 3-methyladenine DNA glycosylase I constituti
blastp_pdb 4ai5_E 117 299 + 183 Gaps:2 96.28 188 38.12 1e-38 mol:protein length:188 DNA-3-METHYLADENINE GLYCOSYLASE I
blastp_pdb 4ai5_D 117 299 + 183 Gaps:2 96.28 188 38.12 1e-38 mol:protein length:188 DNA-3-METHYLADENINE GLYCOSYLASE I
blastp_pdb 4ai5_C 117 299 + 183 Gaps:2 96.28 188 38.12 1e-38 mol:protein length:188 DNA-3-METHYLADENINE GLYCOSYLASE I
blastp_pdb 4ai5_B 117 299 + 183 Gaps:2 96.28 188 38.12 1e-38 mol:protein length:188 DNA-3-METHYLADENINE GLYCOSYLASE I
blastp_uniprot_sprot sp|Q7VG78|GUAA_HELHP 121 309 + 189 Gaps:6 13.75 1375 46.03 7e-50 Probable GMP synthase [glutamine-hydrolyzing] OS Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN guaA PE 3 SV 1
blastp_uniprot_sprot sp|P05100|3MG1_ECOLI 120 302 + 183 Gaps:2 96.79 187 39.23 7e-45 DNA-3-methyladenine glycosylase 1 OS Escherichia coli (strain K12) GN tag PE 1 SV 1
blastp_uniprot_sprot sp|P44321|3MGA_HAEIN 121 299 + 179 Gaps:2 95.68 185 42.94 7e-43 DNA-3-methyladenine glycosylase OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN tag PE 3 SV 1
rpsblast_cdd gnl|CDD|190612 124 304 + 181 Gaps:2 100.00 179 54.19 4e-82 pfam03352 Adenine_glyco Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.
rpsblast_cdd gnl|CDD|32646 121 306 + 186 Gaps:1 98.40 188 44.86 1e-54 COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|129711 121 302 + 182 Gaps:4 99.44 179 37.64 9e-43 TIGR00624 tag DNA-3-methyladenine glycosylase I. All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|182401 120 300 + 181 Gaps:2 95.72 187 39.66 2e-42 PRK10353 PRK10353 3-methyl-adenine DNA glycosylase I Provisional.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 306 300 PTHR31116:SF3 none none none
Gene3D 120 303 184 G3DSA:1.10.340.30 "Reactome:REACT_216" none IPR011257
Pfam 124 303 180 PF03352 none Methyladenine glycosylase IPR005019
PANTHER 7 306 300 PTHR31116 none none none
SUPERFAMILY 120 305 186 SSF48150 "Reactome:REACT_216" none IPR011257

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting