6 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0016491 | oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0005507 | copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. |
GO:0048046 | apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
GO:0046274 | lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. |
GO:0052716 | hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. |
41 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|fve:101306302 | 35 | 540 | + | 506 | Gaps:15 | 83.79 | 586 | 65.58 | 0.0 | putative laccase-9-like |
blastp_kegg | lcl|fve:101314089 | 35 | 539 | + | 505 | Gaps:6 | 84.72 | 589 | 61.92 | 0.0 | laccase-14-like |
blastp_kegg | lcl|pmum:103343290 | 35 | 521 | + | 487 | Gaps:3 | 84.08 | 578 | 62.35 | 0.0 | laccase-14-like |
blastp_kegg | lcl|fve:101302421 | 28 | 522 | + | 495 | Gaps:2 | 83.14 | 593 | 61.46 | 0.0 | putative laccase-9-like |
blastp_kegg | lcl|fve:101304929 | 35 | 527 | + | 493 | Gaps:3 | 83.96 | 586 | 61.18 | 0.0 | putative laccase-9-like |
blastp_kegg | lcl|pper:PRUPE_ppa015996mg | 35 | 521 | + | 487 | Gaps:3 | 85.11 | 571 | 61.73 | 0.0 | hypothetical protein |
blastp_kegg | lcl|fve:101299010 | 36 | 544 | + | 509 | Gaps:3 | 98.65 | 517 | 58.63 | 0.0 | laccase-14-like |
blastp_kegg | lcl|vvi:100262116 | 35 | 521 | + | 487 | Gaps:11 | 82.65 | 588 | 62.14 | 0.0 | putative laccase-9-like |
blastp_kegg | lcl|fve:101304838 | 31 | 521 | + | 491 | Gaps:7 | 82.41 | 597 | 62.20 | 0.0 | putative laccase-9-like |
blastp_kegg | lcl|vvi:100256193 | 35 | 536 | + | 502 | Gaps:9 | 84.72 | 589 | 60.72 | 0.0 | laccase-14-like |
blastp_pdb | 1asq_B | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asq_A | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asp_B | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asp_A | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aso_B | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aso_A | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aoz_B | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aoz_A | 35 | 511 | + | 477 | Gaps:67 | 86.23 | 552 | 29.62 | 7e-45 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 4a2h_A | 32 | 499 | + | 468 | Gaps:71 | 81.25 | 496 | 34.00 | 1e-38 | mol:protein length:496 LACCASE |
blastp_pdb | 4a2g_A | 32 | 499 | + | 468 | Gaps:71 | 81.25 | 496 | 34.00 | 1e-38 | mol:protein length:496 LACCASE |
blastp_uniprot_sprot | sp|Q6Z8L2|LAC9_ORYSJ | 35 | 521 | + | 487 | Gaps:24 | 85.15 | 579 | 51.32 | 6e-168 | Putative laccase-9 OS Oryza sativa subsp. japonica GN LAC9 PE 3 SV 1 |
blastp_uniprot_sprot | sp|Q9FY79|LAC14_ARATH | 35 | 521 | + | 487 | Gaps:13 | 84.01 | 569 | 50.84 | 2e-167 | Laccase-14 OS Arabidopsis thaliana GN LAC14 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q2QZ80|LAC21_ORYSJ | 35 | 521 | + | 487 | Gaps:23 | 84.73 | 583 | 50.00 | 3e-166 | Laccase-21 OS Oryza sativa subsp. japonica GN LAC21 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q5ZCW1|LAC1_ORYSJ | 35 | 521 | + | 487 | Gaps:21 | 84.92 | 577 | 50.20 | 6e-162 | Putative laccase-1 OS Oryza sativa subsp. japonica GN LAC1 PE 3 SV 1 |
blastp_uniprot_sprot | sp|Q84J37|LAC15_ARATH | 35 | 511 | + | 477 | Gaps:13 | 84.25 | 565 | 48.53 | 4e-159 | Laccase-15 OS Arabidopsis thaliana GN TT10 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q8RYM9|LAC2_ORYSJ | 35 | 521 | + | 487 | Gaps:13 | 85.05 | 562 | 45.61 | 5e-147 | Laccase-2 OS Oryza sativa subsp. japonica GN LAC2 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q56YT0|LAC3_ARATH | 22 | 521 | + | 500 | Gaps:25 | 88.60 | 570 | 45.35 | 8e-146 | Laccase-3 OS Arabidopsis thaliana GN LAC3 PE 2 SV 2 |
blastp_uniprot_sprot | sp|O80434|LAC4_ARATH | 32 | 521 | + | 490 | Gaps:15 | 85.84 | 558 | 45.93 | 2e-145 | Laccase-4 OS Arabidopsis thaliana GN IRX12 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q6ID18|LAC10_ARATH | 32 | 521 | + | 490 | Gaps:9 | 86.20 | 558 | 45.32 | 4e-144 | Laccase-10 OS Arabidopsis thaliana GN LAC10 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q5N9X2|LAC4_ORYSJ | 31 | 521 | + | 491 | Gaps:16 | 85.84 | 579 | 44.47 | 3e-143 | Laccase-4 OS Oryza sativa subsp. japonica GN LAC4 PE 2 SV 1 |
14 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Pfam | 113 | 264 | 152 | PF00394 | none | Multicopper oxidase | IPR001117 |
PANTHER | 35 | 522 | 488 | PTHR11709 | none | none | none |
Gene3D | 35 | 113 | 79 | G3DSA:2.60.40.420 | none | none | IPR008972 |
Gene3D | 319 | 522 | 204 | G3DSA:2.60.40.420 | none | none | IPR008972 |
TIGRFAM | 33 | 521 | 489 | TIGR03389 | none | laccase: laccase | IPR017761 |
ProSitePatterns | 484 | 495 | 12 | PS00080 | none | Multicopper oxidases signature 2. | IPR002355 |
Pfam | 382 | 503 | 122 | PF07731 | none | Multicopper oxidase | IPR011706 |
Pfam | 35 | 99 | 65 | PF07732 | none | Multicopper oxidase | IPR011707 |
ProSitePatterns | 479 | 499 | 21 | PS00079 | none | Multicopper oxidases signature 1. | IPR002355 |
Gene3D | 114 | 297 | 184 | G3DSA:2.60.40.420 | none | none | IPR008972 |
SUPERFAMILY | 35 | 121 | 87 | SSF49503 | none | none | IPR008972 |
SUPERFAMILY | 312 | 521 | 210 | SSF49503 | none | none | IPR008972 |
PANTHER | 35 | 522 | 488 | PTHR11709:SF24 | none | none | none |
SUPERFAMILY | 106 | 297 | 192 | SSF49503 | none | none | IPR008972 |
15 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
Bourran_2000_2002_QTL2_Delta.F | Qrob_Chr02 | 2 | s_1CSO13_1244 | s_1AVEUF_1540 | 55.44 | 46,71 | 63,68 | lod | 7.3232 | 0.058 |
Bourran2_2002_QTL7_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 29 | 52 | lod | 8,1 | 16 |
Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2015_nP_A4 | Qrob_Chr02 | 2 | s_1A0FUE_1868 | s_1A1UAI_500 | 20,64 | 20,47 | 21,36 | lod | 5.8 | 10.9 |
Bourran2_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 24,87 | 24,63 | 26,18 | lod | 3.8 | 7 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf | Qrob_Chr02 | 2 | s_1AEP21_172 | v_6048_204 | 46.33 | 22,5 | 65,23 | lod | 4.972 | 0.03 |
Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
Bourran1_2004_QTL3_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 46 | lod | 2,9 | 6,4 |
Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |