Protein : Qrob_P0514150.2 Q. robur
Protein Identifier  ? Qrob_P0514150.2 Organism . Name  Quercus robur
Score  86.2 Score Type  egn
Protein Description  (M=1) K15153 - mediator of RNA polymerase II transcription subunit 31 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 254  
Kegg Orthology  K15153
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0001104 RNA polymerase II transcription cofactor activity Interacting selectively and non-covalently with an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to modulate transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between regulatory transcription factors and the basal RNAP II transcription machinery.
GO:0016592 mediator complex A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_007G063000g 48 250 + 203 Gaps:6 100.00 207 75.85 7e-108 hypothetical protein
blastp_kegg lcl|gmx:100527879 48 250 + 203 Gaps:3 99.51 205 75.00 1e-106 uncharacterized LOC100527879
blastp_kegg lcl|vvi:100247653 54 250 + 197 Gaps:6 96.46 198 78.53 2e-104 mediator of RNA polymerase II transcription subunit 31
blastp_kegg lcl|gmx:100818057 48 250 + 203 Gaps:5 100.00 206 76.70 1e-102 mediator of RNA polymerase II transcription subunit 31-like
blastp_kegg lcl|cam:101496753 48 250 + 203 Gaps:6 100.00 201 75.12 1e-98 mediator of RNA polymerase II transcription subunit 31-like
blastp_kegg lcl|pmum:103333007 55 250 + 196 Gaps:4 96.00 200 81.25 3e-98 mediator of RNA polymerase II transcription subunit 31
blastp_kegg lcl|pper:PRUPE_ppa011632mg 55 250 + 196 Gaps:4 96.00 200 80.73 3e-97 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10032791mg 48 250 + 203 Gaps:7 98.49 199 79.59 3e-97 hypothetical protein
blastp_kegg lcl|cit:102609887 48 250 + 203 Gaps:7 98.49 199 79.59 3e-97 mediator of RNA polymerase II transcription subunit 31-like
blastp_kegg lcl|tcc:TCM_014808 48 250 + 203 Gaps:6 98.56 208 76.10 4e-96 Mediator of RNA polymerase II transcription subunit 31 isoform 1
blastp_pdb 3fbn_D 60 141 + 82 Gaps:1 63.85 130 43.37 1e-13 mol:protein length:130 Mediator of RNA polymerase II transcription s
blastp_pdb 3fbn_B 60 141 + 82 Gaps:1 63.85 130 43.37 1e-13 mol:protein length:130 Mediator of RNA polymerase II transcription s
blastp_pdb 3fbi_D 60 141 + 82 Gaps:1 63.85 130 43.37 1e-13 mol:protein length:130 Mediator of RNA polymerase II transcription s
blastp_pdb 3fbi_B 60 141 + 82 Gaps:1 63.85 130 43.37 1e-13 mol:protein length:130 Mediator of RNA polymerase II transcription s
blastp_uniprot_sprot sp|Q8VYB1|MED31_ARATH 53 250 + 198 Gaps:15 96.43 196 71.96 3e-84 Mediator of RNA polymerase II transcription subunit 31 OS Arabidopsis thaliana GN MED31 PE 1 SV 1
blastp_uniprot_sprot sp|Q54NI7|MED31_DICDI 79 175 + 97 none 55.11 176 58.76 4e-38 Putative mediator of RNA polymerase II transcription subunit 31 OS Dictyostelium discoideum GN med31 PE 3 SV 1
blastp_uniprot_sprot sp|A0JNN3|MED31_BOVIN 64 176 + 113 none 86.26 131 46.02 2e-29 Mediator of RNA polymerase II transcription subunit 31 OS Bos taurus GN MED31 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CXU1|MED31_MOUSE 64 176 + 113 none 86.26 131 46.02 2e-29 Mediator of RNA polymerase II transcription subunit 31 OS Mus musculus GN Med31 PE 1 SV 2
blastp_uniprot_sprot sp|Q9Y3C7|MED31_HUMAN 64 176 + 113 none 86.26 131 46.02 4e-29 Mediator of RNA polymerase II transcription subunit 31 OS Homo sapiens GN MED31 PE 1 SV 1
blastp_uniprot_sprot sp|Q8IH24|MED31_DROME 77 178 + 102 none 50.00 204 47.06 4e-29 Mediator of RNA polymerase II transcription subunit 31 OS Drosophila melanogaster GN MED31 PE 1 SV 2
blastp_uniprot_sprot sp|Q6DH26|MED31_DANRE 74 176 + 103 none 75.74 136 49.51 2e-28 Mediator of RNA polymerase II transcription subunit 31 OS Danio rerio GN med31 PE 2 SV 2
blastp_uniprot_sprot sp|Q9USH1|MED31_SCHPO 69 167 + 99 Gaps:1 70.50 139 52.04 3e-28 Mediator of RNA polymerase II transcription subunit 31 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN med31 PE 3 SV 1
blastp_uniprot_sprot sp|Q28FE2|MED31_XENTR 73 176 + 104 none 81.25 128 48.08 8e-28 Mediator of RNA polymerase II transcription subunit 31 OS Xenopus tropicalis GN med31 PE 2 SV 2
blastp_uniprot_sprot sp|Q6GQA1|MD31B_XENLA 77 176 + 100 none 77.52 129 50.00 3e-27 Mediator of RNA polymerase II transcription subunit 31-B OS Xenopus laevis GN med31-b PE 2 SV 2
rpsblast_cdd gnl|CDD|203302 75 176 + 102 none 99.03 103 52.94 2e-38 pfam05669 Med31 SOH1. The family consists of Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair but transcription as well. Thus the SOH1 protein may serve to couple these two processes.
rpsblast_cdd gnl|CDD|34692 69 169 + 101 Gaps:1 87.72 114 45.00 2e-24 COG5088 SOH1 Rad5p-binding protein [General function prediction only].
rpsblast_kog gnl|CDD|39289 75 176 + 102 none 78.46 130 52.94 2e-29 KOG4086 KOG4086 KOG4086 Transcriptional regulator SOH1 [Transcription Replication recombination and repair].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 46 205 160 PTHR13186:SF0 none none none
PANTHER 46 205 160 PTHR13186 none none IPR008831
Pfam 77 175 99 PF05669 none SOH1 IPR008831

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting