Protein : Qrob_P0502610.2 Q. robur
Protein Identifier  ? Qrob_P0502610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K04569 - copper chaperone for superoxide dismutase Gene Prediction Quality  validated
Protein length 

Sequence

Length: 320  
Kegg Orthology  K04569
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0030001 metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006801 superoxide metabolic process The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101307396 1 319 + 319 Gaps:16 100.00 325 75.69 4e-166 copper chaperone for superoxide dismutase-like
blastp_kegg lcl|pper:PRUPE_ppa008639mg 31 319 + 289 Gaps:4 87.96 324 78.60 1e-161 hypothetical protein
blastp_kegg lcl|gmx:547617 1 319 + 319 Gaps:15 100.00 304 76.97 1e-160 CCS Cu/Zn-superoxide dismutase copper chaperone
blastp_kegg lcl|tcc:TCM_016126 1 319 + 319 Gaps:10 100.00 317 74.76 2e-159 Copper chaperone for SOD1
blastp_kegg lcl|cit:102620720 54 319 + 266 none 81.85 325 82.33 2e-157 copper chaperone for superoxide dismutase chloroplastic/cytosolic-like
blastp_kegg lcl|cmo:103490957 1 319 + 319 Gaps:9 100.00 328 71.34 6e-157 copper chaperone for superoxide dismutase chloroplastic/cytosolic
blastp_kegg lcl|cic:CICLE_v10021134mg 54 319 + 266 none 81.60 326 81.95 3e-156 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1682180 33 319 + 287 Gaps:1 87.27 330 76.74 5e-156 superoxide dismutase copper chaperone putative
blastp_kegg lcl|pmum:103337346 31 319 + 289 Gaps:4 87.96 324 77.54 6e-156 copper chaperone for superoxide dismutase chloroplastic/cytosolic
blastp_kegg lcl|pop:POPTR_0003s11830g 51 319 + 269 none 83.28 323 78.07 1e-155 POPTRDRAFT_1073958 hypothetical protein
blastp_pdb 1jk9_D 91 308 + 218 Gaps:26 91.57 249 30.26 3e-23 mol:protein length:249 copper chaperone for superoxide dismutase
blastp_pdb 1jk9_B 91 308 + 218 Gaps:26 91.57 249 30.26 3e-23 mol:protein length:249 copper chaperone for superoxide dismutase
blastp_pdb 1do5_D 161 291 + 131 Gaps:20 98.05 154 36.42 5e-19 mol:protein length:154 HUMAN COPPER CHAPERONE FOR SUPEROXIDE DISMUTA
blastp_pdb 1do5_C 161 291 + 131 Gaps:20 98.05 154 36.42 5e-19 mol:protein length:154 HUMAN COPPER CHAPERONE FOR SUPEROXIDE DISMUTA
blastp_pdb 1do5_B 161 291 + 131 Gaps:20 98.05 154 36.42 5e-19 mol:protein length:154 HUMAN COPPER CHAPERONE FOR SUPEROXIDE DISMUTA
blastp_pdb 1do5_A 161 291 + 131 Gaps:20 98.05 154 36.42 5e-19 mol:protein length:154 HUMAN COPPER CHAPERONE FOR SUPEROXIDE DISMUTA
blastp_pdb 1qup_B 91 293 + 203 Gaps:26 95.95 222 28.64 9e-16 mol:protein length:222 SUPEROXIDE DISMUTASE 1 COPPER CHAPERONE
blastp_pdb 1qup_A 91 293 + 203 Gaps:26 95.95 222 28.64 9e-16 mol:protein length:222 SUPEROXIDE DISMUTASE 1 COPPER CHAPERONE
blastp_pdb 3mnd_B 164 270 + 107 Gaps:10 75.66 152 38.26 2e-13 mol:protein length:152 Superoxide dismutase [Cu-Zn]
blastp_pdb 3mnd_A 164 270 + 107 Gaps:10 75.66 152 38.26 2e-13 mol:protein length:152 Superoxide dismutase [Cu-Zn]
blastp_uniprot_sprot sp|Q9LD47|CCS_ARATH 33 319 + 287 Gaps:10 88.44 320 65.37 1e-133 Copper chaperone for superoxide dismutase chloroplastic/cytosolic OS Arabidopsis thaliana GN CCS PE 1 SV 1
blastp_uniprot_sprot sp|Q7XTY9|CCS_ORYSJ 82 310 + 229 Gaps:1 73.08 312 74.56 2e-121 Copper chaperone for superoxide dismutase chloroplastic OS Oryza sativa subsp. japonica GN CCS PE 2 SV 1
blastp_uniprot_sprot sp|O14618|CCS_HUMAN 90 312 + 223 Gaps:20 88.69 274 38.68 2e-43 Copper chaperone for superoxide dismutase OS Homo sapiens GN CCS PE 1 SV 1
blastp_uniprot_sprot sp|Q6PWT7|CCS_PIG 88 312 + 225 Gaps:20 89.42 274 39.18 5e-43 Copper chaperone for superoxide dismutase OS Sus scrofa GN CCS PE 2 SV 1
blastp_uniprot_sprot sp|Q9JK72|CCS_RAT 90 312 + 223 Gaps:20 88.69 274 38.68 5e-43 Copper chaperone for superoxide dismutase OS Rattus norvegicus GN Ccs PE 1 SV 1
blastp_uniprot_sprot sp|Q9WU84|CCS_MOUSE 90 312 + 223 Gaps:20 88.69 274 38.27 1e-42 Copper chaperone for superoxide dismutase OS Mus musculus GN Ccs PE 2 SV 1
blastp_uniprot_sprot sp|Q6BZU2|CCS1_YARLI 89 308 + 220 Gaps:28 92.31 234 35.19 5e-29 Superoxide dismutase 1 copper chaperone OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN CCS1 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BK66|CCS1_DEBHA 91 308 + 218 Gaps:24 92.00 250 31.74 9e-29 Superoxide dismutase 1 copper chaperone OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN CCS1 PE 3 SV 2
blastp_uniprot_sprot sp|Q6FU61|CCS1_CANGA 91 308 + 218 Gaps:29 90.79 239 34.56 1e-23 Superoxide dismutase 1 copper chaperone OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN CCS1 PE 3 SV 1
blastp_uniprot_sprot sp|P40202|CCS1_YEAST 91 308 + 218 Gaps:26 91.57 249 30.26 1e-22 Superoxide dismutase 1 copper chaperone OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CCS1 PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 118 312 195 PTHR10003 none none none
Gene3D 162 287 126 G3DSA:2.60.40.200 "MetaCyc:PWY-6854" none IPR001424
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 153 311 159 SSF49329 "MetaCyc:PWY-6854" none IPR001424
Phobius 20 24 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 89 153 65 G3DSA:3.30.70.100 none none none
SUPERFAMILY 88 151 64 SSF55008 none none IPR006121
Pfam 164 275 112 PF00080 "MetaCyc:PWY-6854" Copper/zinc superoxide dismutase (SODC) IPR001424
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 25 319 295 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 91 146 56 PF00403 none Heavy-metal-associated domain IPR006121
ProSiteProfiles 87 150 64 PS50846 none Heavy-metal-associated domain profile. IPR006121
Phobius 7 19 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23
SignalP_EUK 1 24 23
SignalP_GRAM_NEGATIVE 1 24 23

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting