Protein : Qrob_P0497560.2 Q. robur
Protein Identifier  ? Qrob_P0497560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10870 - RAD51-like protein 2 Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 298  
Kegg Orthology  K10870
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267711 1 297 + 297 none 85.84 346 81.82 0.0 DNA repair protein RAD51 homolog 3-like
blastp_kegg lcl|sly:101266032 1 297 + 297 none 85.84 346 77.78 2e-177 DNA repair protein RAD51 homolog 3-like
blastp_kegg lcl|sot:102588877 1 297 + 297 none 85.84 346 77.10 3e-176 DNA repair protein RAD51 homolog 3-like
blastp_kegg lcl|mtr:MTR_4g112130 1 297 + 297 Gaps:1 85.88 347 79.19 1e-174 DNA repair protein RAD51-like protein
blastp_kegg lcl|mtr:MTR_4g111780 1 297 + 297 Gaps:1 85.88 347 79.19 1e-174 DNA repair protein RAD51-like protein
blastp_kegg lcl|pvu:PHAVU_010G082100g 20 297 + 278 none 80.12 347 84.17 6e-174 hypothetical protein
blastp_kegg lcl|mtr:MTR_4g024850 1 297 + 297 Gaps:1 85.88 347 78.86 2e-173 DNA repair protein RAD51-like protein
blastp_kegg lcl|cam:101498528 1 297 + 297 Gaps:1 85.88 347 78.52 6e-173 DNA repair protein RAD51 homolog 3-like
blastp_kegg lcl|rcu:RCOM_1611350 1 297 + 297 none 85.84 346 76.09 8e-172 DNA repair and recombination protein radA putative
blastp_kegg lcl|pmum:103331768 1 297 + 297 none 85.84 346 77.44 4e-171 DNA repair protein RAD51 homolog 3
blastp_pdb 2zud_B 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2zud_A 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2zuc_B 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2zuc_A 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2zub_B 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2zub_A 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2z43_C 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2z43_B 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2z43_A 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_pdb 2dfl_A 24 287 + 264 Gaps:25 76.85 324 36.95 8e-41 mol:protein length:324 DNA repair and recombination protein radA
blastp_uniprot_sprot sp|Q8GXF0|RA51C_ARATH 15 297 + 283 none 77.96 363 78.45 1e-160 DNA repair protein RAD51 homolog 3 OS Arabidopsis thaliana GN RAD51C PE 1 SV 2
blastp_uniprot_sprot sp|Q924H5|RA51C_MOUSE 15 287 + 273 Gaps:1 74.86 366 43.80 2e-77 DNA repair protein RAD51 homolog 3 OS Mus musculus GN Rad51c PE 2 SV 1
blastp_uniprot_sprot sp|Q8R2J9|RA51C_CRIGR 15 288 + 274 Gaps:1 75.14 366 43.27 2e-76 DNA repair protein RAD51 homolog 3 OS Cricetulus griseus GN RAD51C PE 2 SV 1
blastp_uniprot_sprot sp|O43502|RA51C_HUMAN 25 287 + 263 Gaps:9 70.21 376 44.70 3e-72 DNA repair protein RAD51 homolog 3 OS Homo sapiens GN RAD51C PE 1 SV 1
blastp_uniprot_sprot sp|Q54PJ7|RA51C_DICDI 39 290 + 252 Gaps:4 66.14 381 43.65 5e-66 DNA repair protein RAD51 homolog 3 OS Dictyostelium discoideum GN rad51c PE 3 SV 1
blastp_uniprot_sprot sp|Q975Y1|RADA_SULTO 24 287 + 264 Gaps:25 76.85 324 40.16 5e-45 DNA repair and recombination protein RadA OS Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|P0CW91|RADA_AERPX 24 287 + 264 Gaps:26 77.74 319 40.32 1e-43 DNA repair and recombination protein RadA OS Aeropyrum pernix GN radA PE 3 SV 1
blastp_uniprot_sprot sp|P0CW92|RADA_AERPE 24 287 + 264 Gaps:26 77.74 319 39.92 2e-43 DNA repair and recombination protein RadA OS Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|A4YCN4|RADA_METS5 24 287 + 264 Gaps:31 76.85 324 36.95 3e-41 DNA repair and recombination protein RadA OS Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q9Y8J4|RADA_DESAM 24 287 + 264 Gaps:32 75.61 328 38.71 4e-41 DNA repair and recombination protein RadA OS Desulfurococcus amylolyticus GN radA PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 35 224 190 PS50162 none RecA family profile 1. IPR020588
Gene3D 37 286 250 G3DSA:3.40.50.300 none none IPR027417
PIRSF 5 290 286 PIRSF005856 none none IPR016467
PANTHER 21 116 96 PTHR22942:SF14 none none none
Pfam 134 286 153 PF08423 none Rad51 IPR013632
Pfam 22 114 93 PF08423 none Rad51 IPR013632
PANTHER 21 116 96 PTHR22942 none none none
SUPERFAMILY 37 285 249 SSF52540 none none IPR027417
PANTHER 136 286 151 PTHR22942 none none none
PANTHER 136 286 151 PTHR22942:SF14 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting