Protein : Qrob_P0478080.2 Q. robur
Protein Identifier  ? Qrob_P0478080.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11273 - chromosome transmission fidelity protein 1 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 919  
Kegg Orthology  K11273
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0004003 ATP-dependent DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa017676mg 14 918 + 905 Gaps:20 98.49 925 76.07 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s18290g 13 918 + 906 Gaps:19 99.89 918 73.94 0.0 POPTRDRAFT_797535 hypothetical protein
blastp_kegg lcl|pmum:103327938 14 918 + 905 Gaps:44 98.44 899 76.95 0.0 probable ATP-dependent RNA helicase DDX11
blastp_kegg lcl|pxb:103944873 13 918 + 906 Gaps:20 79.06 1151 75.60 0.0 probable ATP-dependent RNA helicase DDX11
blastp_kegg lcl|mdm:103443822 13 918 + 906 Gaps:20 98.38 925 75.27 0.0 probable ATP-dependent RNA helicase DDX11
blastp_kegg lcl|fve:101301420 1 918 + 918 Gaps:40 77.74 1168 74.12 0.0 probable ATP-dependent RNA helicase DDX11-like
blastp_kegg lcl|vvi:100265299 13 918 + 906 Gaps:34 92.61 961 76.74 0.0 probable ATP-dependent RNA helicase DDX11-like
blastp_kegg lcl|tcc:TCM_028743 7 918 + 912 Gaps:19 99.89 912 74.09 0.0 RAD3-like DNA-binding helicase protein isoform 1
blastp_kegg lcl|cit:102611409 1 918 + 918 Gaps:21 99.89 930 72.01 0.0 probable ATP-dependent RNA helicase DDX11-like
blastp_kegg lcl|cic:CICLE_v10024822mg 14 916 + 903 Gaps:16 98.38 928 72.40 0.0 hypothetical protein
blastp_pdb 2vsf_A 212 392 + 181 Gaps:27 28.24 602 32.94 6e-13 mol:protein length:602 DNA REPAIR HELICASE RAD3 RELATED PROTEIN
blastp_pdb 4a15_A 212 392 + 181 Gaps:27 27.42 620 32.94 7e-13 mol:protein length:620 ATP-DEPENDENT DNA HELICASE TA0057
blastp_uniprot_sprot sp|A8MPP1|D11L8_HUMAN 14 910 + 897 Gaps:132 98.02 907 36.11 2e-162 Putative ATP-dependent RNA helicase DDX11-like protein 8 OS Homo sapiens GN DDX11L8 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AXC6|DDX11_MOUSE 24 910 + 887 Gaps:134 96.70 880 37.60 3e-156 Probable ATP-dependent RNA helicase DDX11 OS Mus musculus GN Ddx11 PE 2 SV 1
blastp_uniprot_sprot sp|Q92771|DDX12_HUMAN 27 909 + 883 Gaps:142 92.53 950 36.29 5e-154 Putative ATP-dependent RNA helicase DDX12 OS Homo sapiens GN DDX12P PE 5 SV 3
blastp_uniprot_sprot sp|A1D8E4|CHL1_NEOFI 18 892 + 875 Gaps:129 95.93 861 36.56 3e-151 ATP-dependent RNA helicase chl1 OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN chl1 PE 3 SV 1
blastp_uniprot_sprot sp|Q96FC9|DDX11_HUMAN 14 843 + 830 Gaps:116 87.22 970 35.70 4e-145 Probable ATP-dependent RNA helicase DDX11 OS Homo sapiens GN DDX11 PE 1 SV 1
blastp_uniprot_sprot sp|A2QY22|CHL1_ASPNC 18 909 + 892 Gaps:179 98.28 874 36.79 9e-144 ATP-dependent RNA helicase chl1 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN chl1 PE 3 SV 1
blastp_uniprot_sprot sp|O14147|CHL1_SCHPO 6 913 + 908 Gaps:161 99.17 844 36.80 2e-140 ATP-dependent RNA helicase chl1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN chl1 PE 3 SV 1
blastp_uniprot_sprot sp|A3LN13|CHL1_PICST 18 909 + 892 Gaps:126 97.25 835 35.71 2e-139 ATP-dependent RNA helicase CHL1 OS Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN CHL1 PE 3 SV 2
blastp_uniprot_sprot sp|Q1E5T3|CHL1_COCIM 18 909 + 892 Gaps:139 97.44 861 34.80 7e-135 ATP-dependent RNA helicase CHL1 OS Coccidioides immitis (strain RS) GN CHL1 PE 3 SV 1
blastp_uniprot_sprot sp|A5DNW6|CHL1_PICGU 18 909 + 892 Gaps:127 97.58 825 35.78 1e-133 ATP-dependent RNA helicase CHL1 OS Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN CHL1 PE 3 SV 2
rpsblast_cdd gnl|CDD|161953 208 895 + 688 Gaps:113 91.21 705 32.04 1e-111 TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|191597 219 407 + 189 Gaps:21 100.00 168 50.60 1e-49 pfam06733 DEAD_2 DEAD_2. This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair and forms part of the transcription factor TFIIH in yeast.
rpsblast_cdd gnl|CDD|31392 18 911 + 894 Gaps:120 98.17 654 21.50 3e-41 COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|128764 17 421 + 405 Gaps:37 95.16 289 37.45 1e-39 smart00488 DEXDc2 DEAD-like helicases superfamily.
rpsblast_cdd gnl|CDD|205487 664 889 + 226 Gaps:62 99.39 165 31.71 8e-35 pfam13307 Helicase_C_2 Helicase C-terminal domain. This domain is the second of two tandem AAA domains found in a wide variety of helicase enzymes.
rpsblast_cdd gnl|CDD|128767 687 868 + 182 Gaps:46 95.77 142 41.91 3e-31 smart00491 HELICc2 helicase superfamily c-terminal domain.
rpsblast_kog gnl|CDD|36348 5 914 + 910 Gaps:109 99.51 821 46.02 0.0 KOG1133 KOG1133 KOG1133 Helicase of the DEAD superfamily [Replication recombination and repair].
rpsblast_kog gnl|CDD|36347 17 917 + 901 Gaps:122 80.85 945 31.41 1e-77 KOG1132 KOG1132 KOG1132 Helicase of the DEAD superfamily [Replication recombination and repair].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 826 914 89 PTHR11472 none none none
Gene3D 18 67 50 G3DSA:3.40.50.300 none none IPR027417
Gene3D 356 393 38 G3DSA:3.40.50.300 none none IPR027417
Gene3D 214 267 54 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 11 446 436 PS51193 none Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. IPR014013
SUPERFAMILY 214 264 51 SSF52540 none none IPR027417
SUPERFAMILY 354 398 45 SSF52540 none none IPR027417
SUPERFAMILY 10 67 58 SSF52540 none none IPR027417
SMART 13 429 417 SM00488 none none IPR006554
Pfam 219 404 186 PF06733 none DEAD_2 IPR010614
SMART 17 435 419 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 194 802 609 PTHR11472:SF34 none none none
PANTHER 826 914 89 PTHR11472:SF34 none none none
SMART 682 869 188 SM00491 none none IPR006555
PANTHER 6 131 126 PTHR11472:SF34 none none none
TIGRFAM 183 895 713 TIGR00604 none rad3: DNA repair helicase (rad3) IPR013020
Pfam 664 877 214 PF13307 none Helicase C-terminal domain IPR006555
PANTHER 194 802 609 PTHR11472 none none none
PANTHER 6 131 126 PTHR11472 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting