Protein : Qrob_P0476870.2 Q. robur
Protein Identifier  ? Qrob_P0476870.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PTHR11730:SF6 - AMMONIUM TRANSPORTER Gene Prediction Quality  validated
Protein length 

Sequence

Length: 193  
Kegg Orthology  K03320
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101222356 3 192 + 190 Gaps:17 48.10 422 57.14 3e-63 ammonium transporter 1 member 2-like
blastp_kegg lcl|cic:CICLE_v10019808mg 3 192 + 190 Gaps:17 40.28 504 57.64 9e-63 hypothetical protein
blastp_kegg lcl|cmo:103485853 3 192 + 190 Gaps:17 39.73 511 56.65 3e-62 ammonium transporter 1 member 2-like
blastp_kegg lcl|cit:102627368 31 192 + 162 Gaps:17 21.53 813 64.57 4e-62 ammonium transporter 1 member 2-like
blastp_kegg lcl|mdm:103414323 3 192 + 190 Gaps:17 40.28 504 56.65 2e-61 ammonium transporter 1 member 2-like
blastp_kegg lcl|cmo:103485850 31 192 + 162 Gaps:17 34.25 511 61.14 1e-60 ammonium transporter 1 member 2
blastp_kegg lcl|csv:101227720 3 192 + 190 Gaps:17 39.73 511 54.19 2e-60 ammonium transporter 1 member 2-like
blastp_kegg lcl|csv:101217871 3 192 + 190 Gaps:17 39.73 511 54.19 3e-60 ammonium transporter 1 member 2-like
blastp_kegg lcl|pper:PRUPE_ppa004450mg 3 192 + 190 Gaps:17 39.88 509 55.17 1e-59 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0610260 3 192 + 190 Gaps:18 40.00 510 55.88 8e-59 ammonium transporter putative
blastp_pdb 2b2j_A 1 189 + 189 Gaps:23 43.61 399 29.31 2e-07 mol:protein length:399 ammonium transporter
blastp_pdb 2b2i_A 1 189 + 189 Gaps:23 43.61 399 29.31 2e-07 mol:protein length:399 ammonium transporter
blastp_pdb 2b2h_A 1 189 + 189 Gaps:23 43.61 399 29.31 2e-07 mol:protein length:399 ammonium transporter
blastp_pdb 2b2f_A 1 189 + 189 Gaps:23 43.61 399 29.31 2e-07 mol:protein length:399 ammonium transporter
blastp_uniprot_sprot sp|Q6K9G1|AMT12_ORYSJ 3 192 + 190 Gaps:18 41.13 496 53.43 9e-57 Ammonium transporter 1 member 2 OS Oryza sativa subsp. japonica GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|O04161|AMT12_SOLLC 3 192 + 190 Gaps:24 40.08 514 53.88 5e-56 Ammonium transporter 1 member 2 OS Solanum lycopersicum GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPJ8|AMT12_ARATH 3 192 + 190 Gaps:18 39.69 514 51.96 4e-54 Ammonium transporter 1 member 2 OS Arabidopsis thaliana GN AMT1-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XQ12|AMT11_ORYSJ 3 192 + 190 Gaps:18 40.96 498 50.98 5e-54 Ammonium transporter 1 member 1 OS Oryza sativa subsp. japonica GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVT8|AMT14_ARATH 3 192 + 190 Gaps:19 40.67 504 50.24 2e-53 Ammonium transporter 1 member 4 OS Arabidopsis thaliana GN AMT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|P58905|AMT11_SOLLC 3 192 + 190 Gaps:18 41.39 488 51.49 3e-53 Ammonium transporter 1 member 1 OS Solanum lycopersicum GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|P54144|AMT11_ARATH 31 192 + 162 Gaps:17 34.93 501 57.71 4e-53 Ammonium transporter 1 member 1 OS Arabidopsis thaliana GN AMT1-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6K9G3|AMT13_ORYSJ 31 192 + 162 Gaps:18 35.34 498 56.25 1e-52 Ammonium transporter 1 member 3 OS Oryza sativa subsp. japonica GN AMT1-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK16|AMT15_ARATH 31 192 + 162 Gaps:16 35.08 496 56.32 2e-52 Putative ammonium transporter 1 member 5 OS Arabidopsis thaliana GN AMT1-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SQH9|AMT13_ARATH 3 192 + 190 Gaps:17 40.76 498 51.23 2e-52 Ammonium transporter 1 member 3 OS Arabidopsis thaliana GN AMT1-3 PE 2 SV 2
rpsblast_cdd gnl|CDD|162060 31 189 + 159 Gaps:23 36.72 403 39.19 5e-27 TIGR00836 amt ammonium transporter. The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some but not others also transport methylammonium. The mechanism of energy coupling if any to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf energy independent NH3 facilitation and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
rpsblast_cdd gnl|CDD|201500 31 192 + 162 Gaps:15 38.35 399 37.91 9e-23 pfam00909 Ammonium_transp Ammonium Transporter Family.
rpsblast_cdd gnl|CDD|30353 33 189 + 157 Gaps:23 35.21 409 34.72 4e-17 COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|163373 31 184 + 154 Gaps:18 37.13 404 33.33 5e-12 TIGR03644 marine_trans_1 probable ammonium transporter marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
rpsblast_kog gnl|CDD|35901 31 189 + 159 Gaps:15 30.00 500 42.67 3e-31 KOG0682 KOG0682 KOG0682 Ammonia permease [Inorganic ion transport and metabolism].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 11 16 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 3 10 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 31 189 159 SSF111352 none none IPR024041
Gene3D 32 189 158 G3DSA:1.10.3430.10 none none IPR029020
PANTHER 31 185 155 PTHR11730 none none IPR001905
PANTHER 31 185 155 PTHR11730:SF6 none none none
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 31 189 159 PF00909 none Ammonium Transporter Family IPR024041
Phobius 17 192 176 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 16 15

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting