Protein : Qrob_P0476830.2 Q. robur
Protein Identifier  ? Qrob_P0476830.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PTHR11730:SF6 - AMMONIUM TRANSPORTER Gene Prediction Quality  validated
Protein length 

Sequence

Length: 211  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026128 1 210 + 210 Gaps:36 43.59 562 65.71 2e-55 Ammonium transporter 1 2
blastp_kegg lcl|cic:CICLE_v10019808mg 1 210 + 210 Gaps:67 53.97 504 59.93 5e-50 hypothetical protein
blastp_kegg lcl|cit:102627368 1 210 + 210 Gaps:67 33.46 813 59.93 7e-50 ammonium transporter 1 member 2-like
blastp_kegg lcl|rcu:RCOM_0610260 1 210 + 210 Gaps:2 35.10 510 82.68 1e-49 ammonium transporter putative
blastp_kegg lcl|mdm:103414323 1 210 + 210 Gaps:3 35.32 504 81.46 3e-48 ammonium transporter 1 member 2-like
blastp_kegg lcl|pper:PRUPE_ppa004450mg 1 210 + 210 Gaps:4 35.17 509 78.21 2e-47 hypothetical protein
blastp_kegg lcl|fve:101298049 4 210 + 207 Gaps:20 9.28 2285 71.23 2e-46 uncharacterized protein LOC101298049
blastp_kegg lcl|rcu:RCOM_1243420 1 210 + 210 Gaps:16 41.15 486 72.50 1e-45 ammonium transporter putative
blastp_kegg lcl|mdm:103435772 2 210 + 209 Gaps:15 39.84 497 71.72 1e-45 ammonium transporter 1 member 4-like
blastp_kegg lcl|vvi:100256949 1 210 + 210 Gaps:1 34.96 512 79.33 1e-45 ammonium transporter 1 member 2-like
blastp_uniprot_sprot sp|P54144|AMT11_ARATH 4 210 + 207 Gaps:4 35.73 501 75.42 8e-46 Ammonium transporter 1 member 1 OS Arabidopsis thaliana GN AMT1-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPJ8|AMT12_ARATH 28 210 + 183 Gaps:1 28.99 514 83.22 3e-45 Ammonium transporter 1 member 2 OS Arabidopsis thaliana GN AMT1-2 PE 1 SV 1
blastp_uniprot_sprot sp|O04161|AMT12_SOLLC 2 210 + 209 Gaps:2 33.85 514 74.71 6e-44 Ammonium transporter 1 member 2 OS Solanum lycopersicum GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVT8|AMT14_ARATH 2 210 + 209 Gaps:16 39.09 504 70.56 7e-44 Ammonium transporter 1 member 4 OS Arabidopsis thaliana GN AMT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|P58905|AMT11_SOLLC 4 210 + 207 Gaps:3 35.86 488 72.00 8e-44 Ammonium transporter 1 member 1 OS Solanum lycopersicum GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK16|AMT15_ARATH 2 210 + 209 Gaps:4 34.68 496 75.58 2e-43 Putative ammonium transporter 1 member 5 OS Arabidopsis thaliana GN AMT1-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6K9G1|AMT12_ORYSJ 8 210 + 203 Gaps:11 32.86 496 75.46 4e-42 Ammonium transporter 1 member 2 OS Oryza sativa subsp. japonica GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SQH9|AMT13_ARATH 2 210 + 209 Gaps:4 34.54 498 73.84 6e-42 Ammonium transporter 1 member 3 OS Arabidopsis thaliana GN AMT1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XQ12|AMT11_ORYSJ 8 210 + 203 Gaps:11 32.73 498 76.69 2e-41 Ammonium transporter 1 member 1 OS Oryza sativa subsp. japonica GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K9G3|AMT13_ORYSJ 11 208 + 198 Gaps:23 50.00 498 53.82 3e-39 Ammonium transporter 1 member 3 OS Oryza sativa subsp. japonica GN AMT1-3 PE 2 SV 1
rpsblast_cdd gnl|CDD|162060 49 210 + 162 Gaps:49 49.63 403 38.50 1e-28 TIGR00836 amt ammonium transporter. The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some but not others also transport methylammonium. The mechanism of energy coupling if any to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf energy independent NH3 facilitation and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
rpsblast_cdd gnl|CDD|201500 100 209 + 110 Gaps:51 40.35 399 33.54 5e-24 pfam00909 Ammonium_transp Ammonium Transporter Family.
rpsblast_cdd gnl|CDD|30353 92 209 + 118 Gaps:47 40.34 409 24.85 2e-14 COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|35901 18 210 + 193 Gaps:51 46.60 500 39.06 3e-32 KOG0682 KOG0682 KOG0682 Ammonia permease [Inorganic ion transport and metabolism].

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 210 208 PTHR11730 none none IPR001905
Phobius 50 74 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 174 192 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 117 121 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 27 49 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 51 85 35 PF00909 none Ammonium Transporter Family IPR024041
Pfam 99 123 25 PF00909 none Ammonium Transporter Family IPR024041
Pfam 125 209 85 PF00909 none Ammonium Transporter Family IPR024041
Phobius 193 210 18 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 45 209 165 SSF111352 none none IPR024041
Gene3D 42 84 43 G3DSA:1.10.3430.10 none none IPR029020
Gene3D 93 123 31 G3DSA:1.10.3430.10 none none IPR029020
Gene3D 124 209 86 G3DSA:1.10.3430.10 none none IPR029020
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 122 143 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 16 26 11 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 150 168 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 144 149 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 94 116 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 169 173 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 75 93 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 3 210 208 PTHR11730:SF6 none none none

6 Localization

Analysis Start End Length
TMHMM 148 170 22
TMHMM 94 116 22
TMHMM 52 74 22
SignalP_GRAM_NEGATIVE 1 22 21
TMHMM 174 193 19
TMHMM 121 143 22

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting