Protein : Qrob_P0476810.2 Q. robur
Protein Identifier  ? Qrob_P0476810.2 Organism . Name  Quercus robur
Protein Description  (M=3) KOG3796 - Ammonium transporter RHBG [Intracellular trafficking secretion and vesicular transport General function prediction only]. Alias (in v1)  Qrob_P0109500.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 511  
Kegg Orthology  K03320
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102627368 1 499 + 499 Gaps:8 61.87 813 84.69 0.0 ammonium transporter 1 member 2-like
blastp_kegg lcl|cic:CICLE_v10019808mg 1 499 + 499 Gaps:4 99.01 504 85.37 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_026129 1 507 + 507 Gaps:1 99.61 510 84.65 0.0 Ammonium transporter 1 2
blastp_kegg lcl|mdm:103414323 1 501 + 501 Gaps:3 100.00 504 83.53 0.0 ammonium transporter 1 member 2-like
blastp_kegg lcl|cmo:103485853 1 504 + 504 Gaps:4 98.63 511 81.55 0.0 ammonium transporter 1 member 2-like
blastp_kegg lcl|rcu:RCOM_0610260 1 510 + 510 Gaps:2 100.00 510 81.96 0.0 ammonium transporter putative
blastp_kegg lcl|pop:POPTR_0019s04030g 4 510 + 507 Gaps:3 100.00 506 80.24 0.0 POPTRDRAFT_665333 ammonium transporter 2 family protein
blastp_kegg lcl|gmx:100797759 1 508 + 508 Gaps:13 100.00 505 82.57 0.0 ammonium transporter 1 member 2-like
blastp_kegg lcl|pvu:PHAVU_007G120200g 1 510 + 510 Gaps:15 99.41 510 82.05 0.0 hypothetical protein
blastp_kegg lcl|sot:102578704 2 499 + 498 Gaps:5 97.85 512 79.44 0.0 ammonium transporter 1 member 2-like
blastp_pdb 1xqf_A 48 473 + 426 Gaps:64 94.74 418 33.84 8e-39 mol:protein length:418 Probable ammonium transporter
blastp_pdb 1xqe_A 48 473 + 426 Gaps:64 94.74 418 33.84 8e-39 mol:protein length:418 Probable ammonium transporter
blastp_pdb 2ns1_A 48 473 + 426 Gaps:64 96.12 412 33.84 8e-39 mol:protein length:412 Ammonia channel
blastp_pdb 3c1g_A 48 473 + 426 Gaps:64 93.40 424 33.84 8e-39 mol:protein length:424 Ammonia channel
blastp_pdb 2nop_A 48 473 + 426 Gaps:64 93.40 424 33.84 8e-39 mol:protein length:424 Ammonia channel
blastp_pdb 2nmr_A 48 473 + 426 Gaps:64 93.40 424 33.84 8e-39 mol:protein length:424 Ammonia channel
blastp_pdb 2nuu_F 48 473 + 426 Gaps:64 95.42 415 33.84 1e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_E 48 473 + 426 Gaps:64 95.42 415 33.84 1e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_D 48 473 + 426 Gaps:64 95.42 415 33.84 1e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_C 48 473 + 426 Gaps:64 95.42 415 33.84 1e-38 mol:protein length:415 Ammonia channel
blastp_uniprot_sprot sp|O04161|AMT12_SOLLC 2 499 + 498 Gaps:5 97.47 514 78.24 0.0 Ammonium transporter 1 member 2 OS Solanum lycopersicum GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPJ8|AMT12_ARATH 2 505 + 504 Gaps:11 99.42 514 77.69 0.0 Ammonium transporter 1 member 2 OS Arabidopsis thaliana GN AMT1-2 PE 1 SV 1
blastp_uniprot_sprot sp|P54144|AMT11_ARATH 4 507 + 504 Gaps:7 99.60 501 76.35 0.0 Ammonium transporter 1 member 1 OS Arabidopsis thaliana GN AMT1-1 PE 1 SV 1
blastp_uniprot_sprot sp|P58905|AMT11_SOLLC 4 498 + 495 Gaps:7 100.00 488 77.05 0.0 Ammonium transporter 1 member 1 OS Solanum lycopersicum GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SQH9|AMT13_ARATH 3 500 + 498 Gaps:7 99.00 498 76.27 0.0 Ammonium transporter 1 member 3 OS Arabidopsis thaliana GN AMT1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK16|AMT15_ARATH 3 501 + 499 Gaps:7 99.19 496 75.61 0.0 Putative ammonium transporter 1 member 5 OS Arabidopsis thaliana GN AMT1-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6K9G1|AMT12_ORYSJ 4 479 + 476 Gaps:12 93.95 496 79.18 0.0 Ammonium transporter 1 member 2 OS Oryza sativa subsp. japonica GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVT8|AMT14_ARATH 2 496 + 495 Gaps:5 99.21 504 74.80 0.0 Ammonium transporter 1 member 4 OS Arabidopsis thaliana GN AMT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XQ12|AMT11_ORYSJ 4 497 + 494 Gaps:15 97.39 498 76.08 0.0 Ammonium transporter 1 member 1 OS Oryza sativa subsp. japonica GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K9G3|AMT13_ORYSJ 10 501 + 492 Gaps:12 97.59 498 72.22 0.0 Ammonium transporter 1 member 3 OS Oryza sativa subsp. japonica GN AMT1-3 PE 2 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 375 398 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 115 133 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 95 114 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 399 420 22 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 3 504 502 PTHR11730 none none IPR001905
Phobius 1 50 50 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 182 200 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 51 473 423 PF00909 none Ammonium Transporter Family IPR024041
PANTHER 3 504 502 PTHR11730:SF6 none none none
Phobius 75 94 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 447 510 64 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 343 363 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 159 181 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 421 446 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 48 473 426 TIGR00836 none amt: ammonium transporter IPR001905
Phobius 134 152 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 43 454 412 G3DSA:1.10.3430.10 none none IPR029020
Phobius 245 263 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 203 228 26 PS01219 none Ammonium transporters signature. IPR018047
Phobius 153 158 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 51 74 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 225 244 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 364 374 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 264 342 79 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 201 224 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 45 454 410 SSF111352 none none IPR024041

13 Localization

Analysis Start End Length
TMHMM 160 182 22
TMHMM 283 305 22
TMHMM 52 74 22
TMHMM 339 358 19
SignalP_GRAM_POSITIVE 1 22 21
TMHMM 379 398 19
TMHMM 94 116 22
TMHMM 202 224 22
TMHMM 424 446 22
TMHMM 131 153 22
TMHMM 312 334 22
SignalP_GRAM_NEGATIVE 1 22 21
TMHMM 245 263 18

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting