Protein : Qrob_P0464030.2 Q. robur
Protein Identifier  ? Qrob_P0464030.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=2) PTHR14950:SF3 - DICER-1 Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 520  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103420980 6 367 + 362 Gaps:55 25.08 1655 55.42 1e-132 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|pxb:103949659 6 367 + 362 Gaps:55 25.08 1655 55.42 9e-132 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|mdm:103455760 6 367 + 362 Gaps:52 25.03 1654 55.56 1e-131 endoribonuclease Dicer homolog 3a
blastp_kegg lcl|cit:102624402 6 367 + 362 Gaps:56 24.92 1653 56.80 2e-126 endoribonuclease Dicer homolog 3-like
blastp_kegg lcl|cic:CICLE_v10007239mg 6 367 + 362 Gaps:56 24.94 1652 56.07 1e-124 hypothetical protein
blastp_kegg lcl|pxb:103953044 7 367 + 361 Gaps:53 24.92 1653 54.37 1e-124 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|tcc:TCM_037410 5 367 + 363 Gaps:53 25.26 1639 54.11 2e-124 Endoribonuclease Dicera putative isoform 2
blastp_kegg lcl|vvi:100254311 6 367 + 362 Gaps:59 25.06 1648 56.42 2e-124 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|csv:101229593 6 367 + 362 Gaps:58 25.38 1639 54.33 8e-119 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|cmo:103488578 6 367 + 362 Gaps:64 25.41 1645 55.50 2e-118 endoribonuclease Dicer homolog 3
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 6 367 + 362 Gaps:56 26.08 1580 48.54 3e-107 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 7 367 + 361 Gaps:67 24.23 1651 46.25 2e-88 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 7 367 + 361 Gaps:59 24.56 1637 43.03 5e-80 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 7 368 + 362 Gaps:61 22.27 1702 28.23 1e-27 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 99 368 + 270 Gaps:36 14.23 1883 32.46 2e-27 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 180 368 + 189 Gaps:12 9.38 1909 37.99 3e-26 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 7 368 + 362 Gaps:39 22.75 1657 31.03 5e-22 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 182 366 + 185 Gaps:12 13.00 1377 36.87 5e-19 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 25 409 + 385 Gaps:105 28.53 1388 28.79 6e-19 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 182 366 + 185 Gaps:12 12.70 1410 36.87 9e-19 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
rpsblast_cdd gnl|CDD|30329 126 255 + 130 Gaps:25 98.52 135 34.59 3e-19 cd02844 PAZ_CAF_like PAZ domain CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways including RNA interference the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes..
rpsblast_cdd gnl|CDD|29697 296 367 + 72 Gaps:3 56.39 133 40.00 5e-14 cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing..
rpsblast_cdd gnl|CDD|197778 296 367 + 72 Gaps:1 56.59 129 38.36 3e-13 smart00535 RIBOc Ribonuclease III family.
rpsblast_cdd gnl|CDD|178863 296 366 + 71 Gaps:10 32.75 229 32.00 2e-11 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|201363 314 367 + 54 none 59.34 91 40.74 1e-08 pfam00636 Ribonuclease_3 Ribonuclease III domain.
rpsblast_cdd gnl|CDD|211723 314 366 + 53 none 26.11 203 37.74 4e-08 TIGR02191 RNaseIII ribonuclease III bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains localized to the nucleus and not included in this family.
rpsblast_cdd gnl|CDD|30916 314 366 + 53 none 22.55 235 37.74 6e-08 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
rpsblast_kog gnl|CDD|35920 5 367 + 363 Gaps:88 27.96 1606 18.71 1e-22 KOG0701 KOG0701 KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 294 376 83 SSF69065 none none IPR000999
SUPERFAMILY 153 211 59 SSF101690 none none IPR003100
SUPERFAMILY 241 249 9 SSF101690 none none IPR003100
Gene3D 153 249 97 G3DSA:2.170.260.10 none none none
ProSiteProfiles 157 222 66 PS50821 none PAZ domain profile. IPR003100
Pfam 314 367 54 PF00636 none Ribonuclease III domain IPR000999
Gene3D 294 369 76 G3DSA:1.10.1520.10 none none IPR000999
ProSiteProfiles 278 361 84 PS50142 none Ribonuclease III family domain profile. IPR000999
Pfam 160 267 108 PF02170 none PAZ domain IPR003100
PANTHER 2 367 366 PTHR14950 none none none
SMART 296 497 202 SM00535 none Ribonuclease III family IPR000999
PANTHER 2 367 366 PTHR14950:SF3 none none none

0 Localization

0 Qtllist

0 Targeting