Protein : Qrob_P0462540.2 Q. robur
Protein Identifier  ? Qrob_P0462540.2 Organism . Name  Quercus robur
Score  63.0 Score Type  egn
Protein Description  (M=6) K03028 - 26S proteasome regulatory subunit N1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 841  
Kegg Orthology  K03028
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0030234 enzyme regulator activity Binds to and modulates the activity of an enzyme.
GO:0000502 proteasome complex A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
GO:0042176 regulation of protein catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103444431 21 839 + 819 Gaps:36 95.64 894 86.78 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A
blastp_kegg lcl|pper:PRUPE_ppa001162mg 21 839 + 819 Gaps:36 95.85 892 86.43 0.0 hypothetical protein
blastp_kegg lcl|mdm:103405640 21 839 + 819 Gaps:36 95.64 894 86.08 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|pxb:103947903 21 839 + 819 Gaps:36 95.64 894 86.08 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|pxb:103945447 22 839 + 818 Gaps:36 95.53 894 85.95 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A
blastp_kegg lcl|cam:101498643 2 838 + 837 Gaps:40 98.08 886 87.34 0.0 26S proteasome non-ATPase regulatory subunit 2 1A-like
blastp_kegg lcl|mtr:MTR_4g078780 19 838 + 820 Gaps:36 96.61 886 86.92 0.0 26S proteasome non-ATPase regulatory subunit
blastp_kegg lcl|fve:101302279 24 838 + 815 Gaps:36 95.40 892 84.96 0.0 26S proteasome non-ATPase regulatory subunit 2 1A-like
blastp_kegg lcl|gmx:100777078 2 838 + 837 Gaps:40 98.19 885 85.96 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|tcc:TCM_008190 21 838 + 818 Gaps:36 96.50 885 87.59 0.0 26S proteasome regulatory subunit S2 1A isoform 1
blastp_pdb 4ady_B 386 762 + 377 Gaps:37 38.21 963 24.18 4e-13 mol:protein length:963 26S PROTEASOME REGULATORY SUBUNIT RPN2
blastp_pdb 4ady_A 386 762 + 377 Gaps:37 38.21 963 24.18 4e-13 mol:protein length:963 26S PROTEASOME REGULATORY SUBUNIT RPN2
blastp_uniprot_sprot sp|Q9SIV2|PSD2A_ARATH 21 838 + 818 Gaps:35 95.74 891 82.77 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog A OS Arabidopsis thaliana GN RPN1A PE 1 SV 2
blastp_uniprot_sprot sp|Q6XJG8|PSD2B_ARATH 21 838 + 818 Gaps:35 95.74 891 80.66 0.0 26S proteasome non-ATPase regulatory subunit 2 homolog B OS Arabidopsis thaliana GN RPN1B PE 1 SV 1
blastp_uniprot_sprot sp|Q13200|PSMD2_HUMAN 3 835 + 833 Gaps:59 96.92 908 50.57 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Homo sapiens GN PSMD2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5R9I6|PSMD2_PONAB 3 835 + 833 Gaps:59 96.92 908 50.45 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Pongo abelii GN PSMD2 PE 2 SV 1
blastp_uniprot_sprot sp|P56701|PSMD2_BOVIN 3 835 + 833 Gaps:59 96.92 908 50.45 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Bos taurus GN PSMD2 PE 1 SV 2
blastp_uniprot_sprot sp|Q4FZT9|PSMD2_RAT 3 835 + 833 Gaps:59 96.92 908 50.34 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Rattus norvegicus GN Psmd2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VDM4|PSMD2_MOUSE 3 835 + 833 Gaps:59 96.92 908 50.34 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Mus musculus GN Psmd2 PE 1 SV 1
blastp_uniprot_sprot sp|P87048|RPN1_SCHPO 4 834 + 831 Gaps:48 96.41 891 48.54 0.0 26S proteasome regulatory subunit rpn1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn1 PE 1 SV 2
blastp_uniprot_sprot sp|Q7S8R8|RPN1_NEUCR 10 838 + 829 Gaps:44 95.90 902 47.17 0.0 26S proteasome regulatory subunit rpn-1 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rpn-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q54BC6|PSMD2_DICDI 21 834 + 814 Gaps:47 92.61 893 50.42 0.0 26S proteasome non-ATPase regulatory subunit 2 OS Dictyostelium discoideum GN psmD2 PE 1 SV 1
rpsblast_cdd gnl|CDD|34713 3 839 + 837 Gaps:49 98.07 881 41.20 0.0 COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|34718 191 765 + 575 Gaps:101 61.56 926 22.46 3e-21 COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|37216 3 837 + 835 Gaps:43 97.72 878 62.70 0.0 KOG2005 KOG2005 KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2 [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|37273 116 767 + 652 Gaps:75 72.87 929 22.16 2e-20 KOG2062 KOG2062 KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1 [Posttranslational modification protein turnover chaperones].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 650 668 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 530 702 173 SSF48371 none none IPR016024
SUPERFAMILY 343 495 153 SSF48371 none none IPR016024
SUPERFAMILY 29 169 141 SSF48371 none none IPR016024
SUPERFAMILY 247 263 17 SSF48371 none none IPR016024
SUPERFAMILY 196 219 24 SSF48371 none none IPR016024
Phobius 734 744 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 3 839 837 PTHR10943:SF1 none none IPR016643
Phobius 669 679 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 680 700 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 839 837 PTHR10943 none none none
Phobius 701 714 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 715 733 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 649 649 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 432 463 32 PF01851 "Reactome:REACT_11045","Reactome:REACT_13","Reactome:REACT_13635","Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_383","Reactome:REACT_578","Reactome:REACT_6185","Reactome:REACT_6850" Proteasome/cyclosome repeat IPR002015
Pfam 653 684 32 PF01851 "Reactome:REACT_11045","Reactome:REACT_13","Reactome:REACT_13635","Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_383","Reactome:REACT_578","Reactome:REACT_6185","Reactome:REACT_6850" Proteasome/cyclosome repeat IPR002015
Gene3D 36 116 81 G3DSA:1.25.10.10 none none IPR011989
Gene3D 590 663 74 G3DSA:1.25.10.10 none none IPR011989
Gene3D 376 545 170 G3DSA:1.25.10.10 none none IPR011989
Phobius 745 762 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 763 840 78 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting