Protein : Qrob_P0460260.2 Q. robur
Protein Identifier  ? Qrob_P0460260.2 Organism . Name  Quercus robur
Score  50.2 Score Type  egn
Protein Description  (M=2) PF02201//PF03126 - SWIB/MDM2 domain // Plus-3 domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 547  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103319242 50 544 + 495 Gaps:28 93.10 551 49.90 1e-158 uncharacterized protein At5g08430
blastp_kegg lcl|pper:PRUPE_ppa025211mg 50 536 + 487 Gaps:12 98.98 492 51.13 3e-158 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s31330g 65 539 + 475 Gaps:21 98.80 500 49.19 4e-155 SWIB complex BAF60b domain-containing family protein
blastp_kegg lcl|pxb:103968119 78 531 + 454 Gaps:48 85.30 558 51.26 2e-147 uncharacterized protein At5g08430-like
blastp_kegg lcl|pxb:103939460 90 535 + 446 Gaps:47 91.78 511 51.39 1e-144 uncharacterized protein At5g08430-like
blastp_kegg lcl|pxb:103933392 72 531 + 460 Gaps:58 62.12 821 46.47 2e-144 uncharacterized protein At5g08430-like
blastp_kegg lcl|pxb:103945337 90 535 + 446 Gaps:47 91.78 511 51.17 7e-144 uncharacterized protein At5g08430-like
blastp_kegg lcl|mdm:103425377 72 531 + 460 Gaps:58 62.12 821 46.67 6e-143 uncharacterized protein At5g08430-like
blastp_kegg lcl|pper:PRUPE_ppa021594mg 96 534 + 439 Gaps:56 92.41 527 47.64 1e-142 hypothetical protein
blastp_kegg lcl|mdm:103453645 90 531 + 442 Gaps:46 90.80 511 50.22 6e-139 uncharacterized protein At5g08430
blastp_pdb 1v32_A 260 341 + 82 none 81.19 101 48.78 2e-21 mol:protein length:101 hypothetical protein RAFL09-47-K03
blastp_uniprot_sprot sp|Q9SIV5|C3H19_ARATH 77 536 + 460 Gaps:59 28.71 1773 29.27 2e-58 Zinc finger CCCH domain-containing protein 19 OS Arabidopsis thaliana GN NERD PE 1 SV 3
blastp_uniprot_sprot sp|Q9SD34|C3H44_ARATH 80 500 + 421 Gaps:42 34.75 1292 29.62 4e-58 Zinc finger CCCH domain-containing protein 44 OS Arabidopsis thaliana GN At3g51120 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FT92|Y5843_ARATH 250 531 + 282 Gaps:43 51.54 553 41.75 7e-57 Uncharacterized protein At5g08430 OS Arabidopsis thaliana GN At5g08430 PE 1 SV 2
blastp_uniprot_sprot sp|Q8BVE8|NSD2_MOUSE 76 166 + 91 Gaps:5 6.45 1365 37.50 1e-10 Histone-lysine N-methyltransferase NSD2 OS Mus musculus GN Whsc1 PE 1 SV 2
blastp_uniprot_sprot sp|O96028|NSD2_HUMAN 76 166 + 91 Gaps:5 6.45 1365 37.50 2e-10 Histone-lysine N-methyltransferase NSD2 OS Homo sapiens GN WHSC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q96L73|NSD1_HUMAN 69 145 + 77 Gaps:9 2.67 2696 45.83 8e-09 Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific OS Homo sapiens GN NSD1 PE 1 SV 1
blastp_uniprot_sprot sp|O88491|NSD1_MOUSE 69 145 + 77 Gaps:9 2.78 2588 43.06 1e-08 Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific OS Mus musculus GN Nsd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9BZ95|NSD3_HUMAN 55 145 + 91 Gaps:11 5.57 1437 38.75 5e-08 Histone-lysine N-methyltransferase NSD3 OS Homo sapiens GN WHSC1L1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P2L6|NSD3_MOUSE 55 207 + 153 Gaps:36 8.13 1439 33.33 5e-08 Histone-lysine N-methyltransferase NSD3 OS Mus musculus GN Whsc1l1 PE 1 SV 2
rpsblast_cdd gnl|CDD|197843 396 495 + 100 Gaps:7 94.50 109 38.83 7e-15 smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein which interacts with Spt6p and in parsley CIP which interacts with the bZIP protein CPRF1.
rpsblast_cdd gnl|CDD|190531 400 495 + 96 Gaps:6 95.24 105 31.00 1e-14 pfam03126 Plus-3 Plus-3 domain. This domain is about 90 residues in length and is often found associated with the pfam02213 domain. The function of this domain is uncertain. It is possible that this domain is involved in DNA binding as it has three conserved positively charged residues hence this domain has been named the plus-3 domain. It is found in yeast Rtf1 which may be a transcription elongation factor.
rpsblast_cdd gnl|CDD|145386 266 338 + 73 Gaps:3 92.11 76 34.29 2e-10 pfam02201 SWIB SWIB/MDM2 domain. This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2.
rpsblast_kog gnl|CDD|37157 190 407 + 218 Gaps:30 100.00 240 29.17 7e-22 KOG1946 KOG1946 KOG1946 RNA polymerase I transcription factor UAF [Transcription].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 50 74 25 Coil none none none
Pfam 400 500 101 PF03126 none Plus-3 domain IPR004343
Gene3D 59 129 71 G3DSA:3.30.40.10 none none IPR013083
Gene3D 251 345 95 G3DSA:1.10.245.10 none none IPR003121
Coils 343 364 22 Coil none none none
Pfam 270 338 69 PF02201 none SWIB/MDM2 domain IPR003121
Coils 27 48 22 Coil none none none
SUPERFAMILY 52 124 73 SSF57903 none none IPR011011
SUPERFAMILY 253 340 88 SSF47592 none none IPR003121
SUPERFAMILY 398 495 98 SSF159042 none none none
ProSiteProfiles 396 525 130 PS51360 none Plus3 domain profile. IPR004343
SMART 79 125 47 SM00249 none PHD zinc finger IPR001965
SMART 396 499 104 SM00719 none Short conserved domain in transcriptional regulators. IPR018144

0 Localization

0 Qtllist

0 Targeting