Protein : Qrob_P0459960.2 Q. robur
Protein Identifier  ? Qrob_P0459960.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11207//PTHR11207:SF4 - RIBONUCLEASE III // SUBFAMILY NOT NAMED (PTHR11207:SF4) Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 539  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103484834 1 537 + 537 Gaps:13 100.00 534 83.15 0.0 uncharacterized LOC103484834
blastp_kegg lcl|csv:101231265 1 537 + 537 Gaps:13 100.00 534 82.58 0.0 uncharacterized LOC101231265
blastp_kegg lcl|pper:PRUPE_ppa004052mg 1 538 + 538 Gaps:6 99.81 533 83.46 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336946 1 538 + 538 Gaps:11 99.81 538 83.05 0.0 uncharacterized LOC103336946
blastp_kegg lcl|pxb:103941368 1 538 + 538 Gaps:11 99.81 538 81.75 0.0 uncharacterized LOC103941368
blastp_kegg lcl|rcu:RCOM_0396310 1 537 + 537 Gaps:17 100.00 532 82.89 0.0 RNA binding protein putative
blastp_kegg lcl|csv:101207336 1 537 + 537 Gaps:14 100.00 533 82.36 0.0 uncharacterized LOC101207336
blastp_kegg lcl|pop:POPTR_0007s10080g 1 537 + 537 Gaps:17 100.00 530 81.70 0.0 hypothetical protein
blastp_kegg lcl|vvi:100254381 1 538 + 538 Gaps:10 99.63 542 82.41 0.0 uncharacterized LOC100254381
blastp_kegg lcl|fve:101307831 1 537 + 537 Gaps:15 99.63 536 82.02 0.0 uncharacterized protein LOC101307831
blastp_uniprot_sprot sp|Q5L0Q3|RNC_GEOKA 173 296 + 124 none 50.41 246 31.45 2e-08 Ribonuclease 3 OS Geobacillus kaustophilus (strain HTA426) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|A4IM67|RNC_GEOTN 171 296 + 126 none 51.22 246 31.75 5e-08 Ribonuclease 3 OS Geobacillus thermodenitrificans (strain NG80-2) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|A9VT87|RNC_BACWK 173 299 + 127 none 51.84 245 29.92 2e-07 Ribonuclease 3 OS Bacillus weihenstephanensis (strain KBAB4) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|Q819V8|RNC_BACCR 173 299 + 127 none 51.84 245 29.13 2e-07 Ribonuclease 3 OS Bacillus cereus (strain ATCC 14579 / DSM 31) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|B7HDX2|RNC_BACC4 173 299 + 127 none 51.84 245 29.13 2e-07 Ribonuclease 3 OS Bacillus cereus (strain B4264) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|B7IUK8|RNC_BACC2 173 299 + 127 none 51.84 245 29.13 2e-07 Ribonuclease 3 OS Bacillus cereus (strain G9842) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|Q6HEW6|RNC_BACHK 173 299 + 127 none 51.84 245 29.13 3e-07 Ribonuclease 3 OS Bacillus thuringiensis subsp. konkukian (strain 97-27) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|C1EP73|RNC_BACC3 173 299 + 127 none 51.84 245 29.13 3e-07 Ribonuclease 3 OS Bacillus cereus (strain 03BB102) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|B7JJT6|RNC_BACC0 173 299 + 127 none 51.84 245 29.13 3e-07 Ribonuclease 3 OS Bacillus cereus (strain AH820) GN rnc PE 3 SV 1
blastp_uniprot_sprot sp|Q81WI8|RNC_BACAN 173 299 + 127 none 51.84 245 29.13 3e-07 Ribonuclease 3 OS Bacillus anthracis GN rnc PE 3 SV 1
rpsblast_cdd gnl|CDD|197778 175 306 + 132 Gaps:9 98.45 129 28.35 5e-19 smart00535 RIBOc Ribonuclease III family.
rpsblast_cdd gnl|CDD|29697 174 527 + 354 Gaps:7 99.25 133 40.15 1e-18 cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing..
rpsblast_cdd gnl|CDD|30916 142 329 + 188 Gaps:29 78.72 235 26.49 2e-09 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 16 538 523 PTHR11207:SF4 none none none
Pfam 174 295 122 PF14622 none Ribonuclease-III-like IPR000999
SUPERFAMILY 402 528 127 SSF69065 none none IPR000999
Phobius 1 273 273 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 274 293 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 16 538 523 PTHR11207 none none none
SUPERFAMILY 141 301 161 SSF69065 none none IPR000999
Gene3D 402 525 124 G3DSA:1.10.1520.10 none none IPR000999
Gene3D 174 300 127 G3DSA:1.10.1520.10 none none IPR000999
SMART 174 311 138 SM00535 none Ribonuclease III family IPR000999
Phobius 294 538 245 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 175 288 114 PS50142 none Ribonuclease III family domain profile. IPR000999

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting