Protein : Qrob_P0458470.2 Q. robur
Protein Identifier  ? Qrob_P0458470.2 Organism . Name  Quercus robur
Score  17.2 Score Type  egn
Protein Description  (M=17) PF00560//PF13516 - Leucine Rich Repeat // Leucine Rich repeat Gene Prediction Quality  validated
Protein length 

Sequence

Length: 621  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1080970 62 507 + 446 Gaps:167 74.70 909 51.25 4e-137 serine-threonine protein kinase plant-type putative (EC:1.3.1.74)
blastp_kegg lcl|mdm:103440051 17 495 + 479 Gaps:109 81.76 680 51.44 1e-134 LRR receptor-like serine/threonine-protein kinase FLS2
blastp_kegg lcl|tcc:TCM_020999 22 499 + 478 Gaps:249 86.56 1019 55.90 3e-134 Disease resistance family protein / LRR family protein putative
blastp_kegg lcl|mdm:103438414 47 494 + 448 Gaps:310 82.99 1017 55.57 2e-133 LRR receptor-like serine/threonine-protein kinase FLS2
blastp_kegg lcl|tcc:TCM_014842 20 515 + 496 Gaps:311 91.12 1025 51.18 3e-133 Disease resistance family protein / LRR family protein putative
blastp_kegg lcl|rcu:RCOM_1452420 59 496 + 438 Gaps:336 87.26 1075 50.00 5e-133 serine/threonine-protein kinase bri1 putative (EC:1.3.1.74)
blastp_kegg lcl|mdm:103417809 17 495 + 479 Gaps:252 86.48 1028 51.97 1e-130 probable leucine-rich repeat receptor-like protein kinase At2g33170
blastp_kegg lcl|pxb:103952744 24 494 + 471 Gaps:283 91.50 1000 48.09 1e-130 LRR receptor-like serine/threonine-protein kinase FLS2
blastp_kegg lcl|pxb:103952798 17 495 + 479 Gaps:271 86.48 1028 53.21 2e-130 LRR receptor-like serine/threonine-protein kinase FLS2
blastp_kegg lcl|pxb:103967289 52 494 + 443 Gaps:164 84.74 983 45.38 2e-130 probable LRR receptor-like serine/threonine-protein kinase At4g36180
blastp_pdb 3rj0_A 20 462 + 443 Gaps:382 85.75 772 51.66 2e-37 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3riz_A 20 462 + 443 Gaps:382 85.75 772 51.66 2e-37 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgz_A 20 462 + 443 Gaps:382 86.20 768 51.66 3e-37 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgx_A 20 462 + 443 Gaps:382 86.20 768 51.66 3e-37 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 1ogq_A 58 457 + 400 Gaps:96 84.98 313 54.51 2e-20 mol:protein length:313 POLYGALACTURONASE INHIBITING PROTEIN
blastp_uniprot_sprot sp|Q9C9H7|RLP12_ARATH 57 478 + 422 Gaps:278 77.92 847 51.82 4e-43 Receptor-like protein 12 OS Arabidopsis thaliana GN RLP12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FIZ3|GSO2_ARATH 65 458 + 394 Gaps:239 62.46 1252 55.75 1e-42 LRR receptor-like serine/threonine-protein kinase GSO2 OS Arabidopsis thaliana GN GSO2 PE 2 SV 2
blastp_uniprot_sprot sp|O22938|Y2182_ARATH 65 461 + 397 Gaps:116 48.88 890 45.98 1e-42 Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS Arabidopsis thaliana GN At2g41820 PE 1 SV 1
blastp_uniprot_sprot sp|C0LGE4|Y1124_ARATH 50 474 + 425 Gaps:69 48.98 882 37.50 2e-42 Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS Arabidopsis thaliana GN At1g12460 PE 1 SV 1
blastp_uniprot_sprot sp|C0LGQ5|GSO1_ARATH 57 514 + 458 Gaps:360 68.13 1249 58.28 1e-41 LRR receptor-like serine/threonine-protein kinase GSO1 OS Arabidopsis thaliana GN GSO1 PE 2 SV 1
blastp_uniprot_sprot sp|C0LGS2|Y4361_ARATH 62 510 + 449 Gaps:287 60.12 1136 49.19 1e-40 Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS Arabidopsis thaliana GN At4g36180 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHI2|Y1723_ARATH 69 470 + 402 Gaps:150 59.58 1101 54.88 2e-39 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS Arabidopsis thaliana GN At1g17230 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FL28|FLS2_ARATH 52 464 + 413 Gaps:132 61.89 1173 46.42 2e-39 LRR receptor-like serine/threonine-protein kinase FLS2 OS Arabidopsis thaliana GN FLS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPS9|BRL2_ARATH 55 482 + 428 Gaps:180 52.93 1143 44.63 4e-39 Serine/threonine-protein kinase BRI1-like 2 OS Arabidopsis thaliana GN BRL2 PE 1 SV 1
blastp_uniprot_sprot sp|O49318|Y2317_ARATH 69 461 + 393 Gaps:188 56.58 1124 56.45 1e-38 Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS Arabidopsis thaliana GN At2g33170 PE 2 SV 1
rpsblast_cdd gnl|CDD|177728 64 454 + 391 Gaps:142 58.06 968 52.31 1e-40 PLN00113 PLN00113 leucine-rich repeat receptor-like protein kinase Provisional.
rpsblast_cdd gnl|CDD|176545 531 614 + 84 Gaps:8 30.77 299 51.09 2e-23 cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I the first GDPD domain of SHV3 and SVLs.
rpsblast_cdd gnl|CDD|176513 6 614 + 609 Gaps:10 46.03 302 47.48 5e-17 cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens.
rpsblast_cdd gnl|CDD|176546 6 51 + 46 none 15.33 300 60.87 7e-15 cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs) which is necessary for SHV3 function.
rpsblast_cdd gnl|CDD|178695 192 456 + 265 Gaps:31 17.82 623 63.96 6e-14 PLN03150 PLN03150 hypothetical protein Provisional.

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 309 326 18 PF00560 none Leucine Rich Repeat IPR001611
Phobius 485 504 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 113 127 15 PF13516 none Leucine Rich repeat none
Gene3D 178 455 278 G3DSA:3.80.10.10 none none none
Gene3D 65 177 113 G3DSA:3.80.10.10 none none none
PANTHER 65 132 68 PTHR24420 none none none
PANTHER 183 497 315 PTHR24420 none none none
Phobius 1 484 484 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 307 320 14 PR00019 none Leucine-rich repeat signature none
PRINTS 161 174 14 PR00019 none Leucine-rich repeat signature none
SUPERFAMILY 175 454 280 SSF52058 none none none
Phobius 505 620 116 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 5 52 48 G3DSA:3.20.20.190 none none IPR017946
PANTHER 65 132 68 PTHR24420:SF637 none none none
PANTHER 183 497 315 PTHR24420:SF637 none none none
SUPERFAMILY 5 76 72 SSF51695 none none IPR017946
SUPERFAMILY 58 223 166 SSF52058 none none none
ProSiteProfiles 6 52 47 PS51704 none GP-PDE domain profile. IPR030395
SMART 234 258 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 307 330 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 392 416 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 283 306 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting