Protein : Qrob_P0446930.2 Q. robur
Protein Identifier  ? Qrob_P0446930.2 Organism . Name  Quercus robur
Score  94.2 Score Type  egn
Protein Description  (M=1) 2.1.1.178 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase. Code Enzyme  EC:2.1.1.178
Gene Prediction Quality  validated Protein length 

Sequence

Length: 572  
Kegg Orthology  K14835
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265196 23 571 + 549 Gaps:87 79.62 633 80.75 0.0 putative ribosomal RNA methyltransferase NOP2-like
blastp_kegg lcl|gmx:100807160 2 571 + 570 Gaps:79 83.39 620 77.37 0.0 putative ribosomal RNA methyltransferase NOP2-like
blastp_kegg lcl|cmo:103501261 20 571 + 552 Gaps:75 80.49 610 80.24 0.0 putative ribosomal RNA methyltransferase NOP2
blastp_kegg lcl|rcu:RCOM_0523120 23 571 + 549 Gaps:76 79.01 624 80.32 0.0 Proliferating-cell nucleolar antigen p120 putative
blastp_kegg lcl|csv:101223309 20 571 + 552 Gaps:74 80.52 611 79.07 0.0 putative ribosomal RNA methyltransferase NOP2-like
blastp_kegg lcl|csv:101211286 20 571 + 552 Gaps:74 80.52 611 79.07 0.0 putative ribosomal RNA methyltransferase NOP2-like
blastp_kegg lcl|pmum:103336244 23 563 + 541 Gaps:81 74.58 657 81.22 0.0 putative ribosomal RNA methyltransferase nop2
blastp_kegg lcl|pper:PRUPE_ppa022478mg 23 550 + 528 Gaps:73 81.00 579 83.80 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s37830g 23 571 + 549 Gaps:74 77.94 612 78.83 0.0 POPTRDRAFT_1070096 hypothetical protein
blastp_kegg lcl|gmx:100789776 5 571 + 567 Gaps:76 83.22 614 77.89 0.0 putative ribosomal RNA methyltransferase NOP2-like
blastp_pdb 1ixk_A 136 492 + 357 Gaps:74 89.84 315 40.64 7e-49 mol:protein length:315 Methyltransferase
blastp_pdb 3ajd_A 216 492 + 277 Gaps:57 83.21 274 46.05 2e-41 mol:protein length:274 Putative methyltransferase MJ0026
blastp_pdb 3a4t_B 216 492 + 277 Gaps:57 83.21 274 46.05 2e-41 mol:protein length:274 Putative methyltransferase MJ0026
blastp_pdb 3a4t_A 216 492 + 277 Gaps:57 83.21 274 46.05 2e-41 mol:protein length:274 Putative methyltransferase MJ0026
blastp_pdb 2frx_D 104 500 + 397 Gaps:101 64.72 479 39.03 4e-38 mol:protein length:479 Hypothetical protein yebU
blastp_pdb 2frx_C 104 500 + 397 Gaps:101 64.72 479 39.03 4e-38 mol:protein length:479 Hypothetical protein yebU
blastp_pdb 2frx_B 104 500 + 397 Gaps:101 64.72 479 39.03 4e-38 mol:protein length:479 Hypothetical protein yebU
blastp_pdb 2frx_A 104 500 + 397 Gaps:101 64.72 479 39.03 4e-38 mol:protein length:479 Hypothetical protein yebU
blastp_pdb 2yxl_A 257 491 + 235 Gaps:27 46.67 450 39.52 1e-31 mol:protein length:450 450aa long hypothetical fmu protein
blastp_pdb 3m4x_A 262 489 + 228 Gaps:17 46.27 456 36.49 3e-31 mol:protein length:456 NOL1/NOP2/sun family protein
blastp_uniprot_sprot sp|P46087|NOP2_HUMAN 39 501 + 463 Gaps:70 48.40 812 66.41 3e-173 Putative ribosomal RNA methyltransferase NOP2 OS Homo sapiens GN NOP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q922K7|NOP2_MOUSE 36 506 + 471 Gaps:74 51.32 793 63.64 2e-171 Putative ribosomal RNA methyltransferase NOP2 OS Mus musculus GN Nop2 PE 2 SV 1
blastp_uniprot_sprot sp|O94268|NOP2_SCHPO 11 498 + 488 Gaps:69 69.90 608 60.24 1e-156 Putative ribosomal RNA methyltransferase nop2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBP8B7.20c PE 1 SV 1
blastp_uniprot_sprot sp|P40991|NOP2_YEAST 58 545 + 488 Gaps:80 68.93 618 55.40 1e-141 Putative ribosomal RNA methyltransferase Nop2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NOP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q60343|TRM4_METJA 216 492 + 277 Gaps:57 83.21 274 46.05 7e-41 tRNA (cytosine(48)-C(5))-methyltransferase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN trm4 PE 1 SV 1
blastp_uniprot_sprot sp|A6TB06|RSMF_KLEP7 104 499 + 396 Gaps:97 64.36 477 37.79 2e-39 Ribosomal RNA small subunit methyltransferase F OS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN rsmF PE 3 SV 2
blastp_uniprot_sprot sp|Q9V106|TRCM_PYRAB 262 491 + 230 Gaps:15 69.13 311 41.86 3e-39 tRNA (cytosine(49)-C(5))-methyltransferase OS Pyrococcus abyssi (strain GE5 / Orsay) GN PYRAB06230 PE 1 SV 1
blastp_uniprot_sprot sp|C3LMI5|RSMF_VIBCM 218 503 + 286 Gaps:49 50.95 473 42.74 3e-39 Ribosomal RNA small subunit methyltransferase F OS Vibrio cholerae serotype O1 (strain M66-2) GN rsmF PE 3 SV 2
blastp_uniprot_sprot sp|Q9KRY1|RSMF_VIBCH 218 503 + 286 Gaps:49 50.95 473 42.74 3e-39 Ribosomal RNA small subunit methyltransferase F OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN rsmF PE 3 SV 2
blastp_uniprot_sprot sp|A0KKI5|RSMF_AERHH 218 491 + 274 Gaps:50 48.84 475 43.10 4e-39 Ribosomal RNA small subunit methyltransferase F OS Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN rsmF PE 3 SV 2

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 261 571 311 PTHR22807:SF30 none none none
Gene3D 264 491 228 G3DSA:3.40.50.150 none none IPR029063
PANTHER 198 235 38 PTHR22807 none none none
ProSiteProfiles 138 492 355 PS51686 none SAM-dependent MTase RsmB/NOP-type domain profile. IPR001678
Phobius 229 249 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 256 490 235 PF01189 none NOL1/NOP2/sun family IPR001678
Pfam 139 188 50 PF01189 none NOL1/NOP2/sun family IPR001678
Phobius 1 195 195 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 196 217 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 198 235 38 PTHR22807:SF30 none none none
PANTHER 9 179 171 PTHR22807:SF30 none none none
PRINTS 403 419 17 PR02008 none RNA (C5-cytosine) methyltransferase signature IPR023267
PRINTS 349 361 13 PR02008 none RNA (C5-cytosine) methyltransferase signature IPR023267
PRINTS 474 491 18 PR02008 none RNA (C5-cytosine) methyltransferase signature IPR023267
PRINTS 282 292 11 PR02008 none RNA (C5-cytosine) methyltransferase signature IPR023267
Phobius 250 571 322 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 218 228 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 261 571 311 PTHR22807 none none none
Coils 35 56 22 Coil none none none
SUPERFAMILY 110 169 60 SSF53335 none none IPR029063
SUPERFAMILY 235 491 257 SSF53335 none none IPR029063
TIGRFAM 255 491 237 TIGR00446 none nop2p: NOL1/NOP2/sun family putative RNA methylase IPR011023
PANTHER 9 179 171 PTHR22807 none none none
PRINTS 101 121 21 PR02012 none RNA (C5-cytosine) methyltransferase NOP2 subfamily signature IPR023273
PRINTS 157 170 14 PR02012 none RNA (C5-cytosine) methyltransferase NOP2 subfamily signature IPR023273
PRINTS 134 146 13 PR02012 none RNA (C5-cytosine) methyltransferase NOP2 subfamily signature IPR023273

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting