Protein : Qrob_P0441290.2 Q. robur
Protein Identifier  ? Qrob_P0441290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PF01176 - Translation initiation factor 1A / IF-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 143  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101206284 7 142 + 136 Gaps:20 91.55 142 64.62 2e-42 translation initiation factor IF-1 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0018s00640g 2 138 + 137 Gaps:35 95.10 143 58.82 4e-39 POPTRDRAFT_809069 hypothetical protein
blastp_kegg lcl|mtr:MTR_8g061130 64 138 + 75 none 51.02 147 84.00 4e-39 Translation initiation factor
blastp_kegg lcl|cam:101513053 52 138 + 87 Gaps:4 55.70 149 78.31 1e-38 translation initiation factor IF-1 chloroplastic-like
blastp_kegg lcl|sly:543687 68 142 + 75 none 48.08 156 78.67 2e-38 infA translation initiation factor IF1
blastp_kegg lcl|sot:102587284 68 142 + 75 none 48.39 155 78.67 2e-38 translation initiation factor IF-1 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_003G183400g 67 138 + 72 none 51.80 139 84.72 1e-37 hypothetical protein
blastp_kegg lcl|gmx:547999 65 138 + 74 none 53.62 138 82.43 2e-37 INFA translation initiation factor IF1
blastp_kegg lcl|pop:POPTR_0006s25780g 70 138 + 69 none 46.94 147 84.06 5e-37 POPTRDRAFT_417365 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa011787mg 41 139 + 99 Gaps:9 45.92 196 73.33 7e-37 hypothetical protein
blastp_pdb 1zo1_W 69 136 + 68 none 95.77 71 58.82 6e-21 mol:protein length:71 translation Initiation Factor 1
blastp_pdb 1hr0_W 69 136 + 68 none 95.77 71 58.82 6e-21 mol:protein length:71 TRANSLATION INITIATION FACTOR
blastp_pdb 1ah9_A 68 138 + 71 none 100.00 71 52.11 7e-20 mol:protein length:71 INITIATION FACTOR 1
blastp_pdb 3i4o_B 76 136 + 61 none 77.22 79 57.38 7e-18 mol:protein length:79 Translation initiation factor IF-1
blastp_pdb 3i4o_A 76 136 + 61 none 77.22 79 57.38 7e-18 mol:protein length:79 Translation initiation factor IF-1
blastp_uniprot_sprot sp|Q94KR9|IF1C_SOLLC 68 142 + 75 none 48.08 156 78.67 8e-40 Translation initiation factor IF-1 chloroplastic OS Solanum lycopersicum GN infA PE 2 SV 1
blastp_uniprot_sprot sp|Q94KR7|IF1C_SOYBN 65 138 + 74 none 53.62 138 82.43 6e-39 Translation initiation factor IF-1 chloroplastic OS Glycine max GN infA PE 2 SV 1
blastp_uniprot_sprot sp|A0A370|IF1C_COFAR 69 138 + 70 none 90.91 77 82.86 4e-38 Translation initiation factor IF-1 chloroplastic OS Coffea arabica GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q95GN3|IF1C_CERJA 69 138 + 70 none 90.91 77 82.86 2e-37 Translation initiation factor IF-1 chloroplastic OS Cercidiphyllum japonicum GN infA PE 1 SV 1
blastp_uniprot_sprot sp|Q0G9S7|IF1C_DAUCA 69 138 + 70 none 90.91 77 80.00 2e-37 Translation initiation factor IF-1 chloroplastic OS Daucus carota GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q09G11|IF1C_PLAOC 69 138 + 70 none 90.91 77 81.43 3e-37 Translation initiation factor IF-1 chloroplastic OS Platanus occidentalis GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q94PL3|IF1C_MONCA 69 138 + 70 none 90.91 77 81.43 3e-37 Translation initiation factor IF-1 chloroplastic OS Montinia caryophyllacea GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q7ICQ5|IF1C_FOUSP 69 138 + 70 none 90.91 77 81.43 3e-37 Translation initiation factor IF-1 chloroplastic OS Fouquieria splendens GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q95GM4|IF1C_GAREL 69 138 + 70 none 90.91 77 81.43 4e-37 Translation initiation factor IF-1 chloroplastic OS Garrya elliptica GN infA PE 3 SV 1
blastp_uniprot_sprot sp|Q09FS6|IF1C_NANDO 69 138 + 70 none 90.91 77 81.43 4e-37 Translation initiation factor IF-1 chloroplastic OS Nandina domestica GN infA PE 3 SV 1
rpsblast_cdd gnl|CDD|176953 67 139 + 73 none 93.59 78 69.86 8e-34 CHL00010 infA translation initiation factor 1.
rpsblast_cdd gnl|CDD|188015 70 136 + 67 none 97.10 69 67.16 7e-30 TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein about 70 residues in length consists largely of an S1 RNA binding domain (pfam00575).
rpsblast_cdd gnl|CDD|178954 68 138 + 71 none 98.61 72 60.56 1e-26 PRK00276 infA translation initiation factor IF-1 Validated.
rpsblast_cdd gnl|CDD|88417 76 136 + 61 none 95.31 64 68.85 2e-23 cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1 S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli the initiation mechanism requires in addition to mRNA fMet-tRNA and ribosomal subunits the presence of three additional proteins (initiation factors IF1 IF2 and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition by binding to the A-site of the 30S ribosomal subunit IF1 may contribute to the fidelity of the selection of the initiation site of the mRNA..
rpsblast_cdd gnl|CDD|30710 76 141 + 66 none 88.00 75 60.61 5e-20 COG0361 InfA Translation initiation factor 1 (IF-1) [Translation ribosomal structure and biogenesis].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 19 29 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 69 136 68 SSF50249 none none IPR012340
SMART 70 138 69 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
Gene3D 64 137 74 G3DSA:2.40.50.140 none none IPR012340
Pfam 76 136 61 PF01176 none Translation initiation factor 1A / IF-1 IPR006196
Phobius 1 18 18 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
TIGRFAM 70 136 67 TIGR00008 none infA: translation initiation factor IF-1 IPR004368
Phobius 1 34 34 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 35 142 108 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 30 34 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 63 138 76 PS50832 none S1 domain IF1 type profile. IPR006196

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting