Protein : Qrob_P0440380.2 Q. robur
Protein Identifier  ? Qrob_P0440380.2 Organism . Name  Quercus robur
Score  20.0 Score Type  egn
Protein Description  (M=1) KOG0674//KOG0675//KOG1798 - Calreticulin [Posttranslational modification protein turnover chaperones]. // Calnexin [Posttranslational modification protein turnover chaperones]. // DNA polymerase epsilon catalytic subunit A [Replication recombination and repair]. Code Enzyme  EC:6.6.1.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1099  
Kegg Orthology  K03403
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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0016851 magnesium chelatase activity Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103415019 96 440 + 345 Gaps:37 49.42 773 80.63 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|cmo:103499529 96 440 + 345 Gaps:37 27.64 1382 82.20 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa000296mg 96 440 + 345 Gaps:37 28.74 1329 81.94 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322036 96 440 + 345 Gaps:37 27.68 1380 82.20 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|csv:101213619 96 440 + 345 Gaps:37 27.64 1382 81.15 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|gmx:100806079 96 440 + 345 Gaps:38 27.67 1384 80.94 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|mdm:103431022 96 440 + 345 Gaps:37 27.68 1380 80.63 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pxb:103941422 96 440 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|pxb:103933269 96 440 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|mdm:103456287 96 440 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_pdb 1hhn_A 637 721 + 85 Gaps:1 83.17 101 57.14 5e-22 mol:protein length:101 CALRETICULIN
blastp_pdb 3rg0_A 646 800 + 155 Gaps:22 40.06 332 42.86 1e-20 mol:protein length:332 Calreticulin
blastp_pdb 1jhn_A 635 757 + 123 Gaps:39 38.21 424 32.10 2e-19 mol:protein length:424 calnexin
blastp_pdb 3qx3_B 823 978 + 156 Gaps:2 19.18 803 34.42 2e-17 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 823 978 + 156 Gaps:2 19.18 803 34.42 2e-17 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 1k9c_A 637 700 + 64 Gaps:1 85.14 74 55.56 2e-13 mol:protein length:74 CALRETICULIN
blastp_pdb 3l4k_A 823 964 + 142 Gaps:14 20.61 757 32.69 7e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 823 964 + 142 Gaps:14 20.61 757 32.69 7e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 2rgr_A 823 964 + 142 Gaps:14 20.55 759 32.69 7e-10 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 1bjt_A 823 964 + 142 Gaps:14 19.67 793 32.69 7e-10 mol:protein length:793 TOPOISOMERASE II
blastp_uniprot_sprot sp|Q10M50|CHLH_ORYSJ 96 440 + 345 Gaps:38 27.61 1387 76.24 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. japonica GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|Q9FNB0|CHLH_ARATH 96 440 + 345 Gaps:38 27.73 1381 74.93 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Arabidopsis thaliana GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|B8ANF1|CHLH_ORYSI 96 440 + 345 Gaps:38 27.61 1387 76.24 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. indica GN CHLH PE 3 SV 1
blastp_uniprot_sprot sp|O04153|CALR3_ARATH 635 820 + 186 Gaps:14 47.17 424 66.50 6e-78 Calreticulin-3 OS Arabidopsis thaliana GN CRT3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9RFD5|BCHH_RHOS4 144 440 + 297 Gaps:30 26.91 1193 36.14 3e-51 Magnesium-chelatase subunit H OS Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN bchH PE 3 SV 1
blastp_uniprot_sprot sp|P26162|BCHH_RHOCB 145 437 + 293 Gaps:35 26.41 1189 36.31 7e-51 Magnesium-chelatase subunit H OS Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN bchH PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZPP1|CALR_BERST 635 779 + 145 Gaps:1 35.10 416 66.44 1e-50 Calreticulin OS Berberis stolonifera PE 2 SV 1
blastp_uniprot_sprot sp|Q40401|CALR_NICPL 633 773 + 141 none 33.89 416 62.41 4e-48 Calreticulin OS Nicotiana plumbaginifolia GN CAL1 PE 2 SV 1
blastp_uniprot_sprot sp|P93508|CALR_RICCO 635 770 + 136 none 32.77 415 66.18 3e-47 Calreticulin OS Ricinus communis PE 2 SV 1
blastp_uniprot_sprot sp|O81919|CALR_BETVU 635 779 + 145 Gaps:1 35.10 416 62.33 4e-47 Calreticulin OS Beta vulgaris PE 2 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 822 971 150 SSF56719 none none IPR013760
Pfam 96 235 140 PF11965 "KEGG:00860+6.6.1.1","MetaCyc:PWY-5531","MetaCyc:PWY-7159" Domain of unknown function (DUF3479) IPR022571
Pfam 239 437 199 PF02514 none CobN/Magnesium Chelatase IPR003672
PANTHER 635 900 266 PTHR11073:SF6 none none none
PRINTS 702 721 20 PR00626 none Calreticulin signature IPR001580
PRINTS 664 686 23 PR00626 none Calreticulin signature IPR001580
PRINTS 636 649 14 PR00626 none Calreticulin signature IPR001580
PRINTS 735 755 21 PR00626 none Calreticulin signature IPR001580
Phobius 26 1098 1073 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 771 808 38 Coil none none none
Pfam 823 961 139 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
SUPERFAMILY 633 737 105 SSF63887 none none IPR009033
Phobius 7 25 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 930 951 22 Coil none none none
PANTHER 635 900 266 PTHR11073 none none IPR001580
Pfam 632 754 123 PF00262 none Calreticulin family IPR001580
Gene3D 632 742 111 G3DSA:2.10.250.10 none none IPR009033
Phobius 1 6 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 822 973 152 G3DSA:1.10.268.10 none none IPR013757
SUPERFAMILY 509 587 79 SSF56672 none none none
SUPERFAMILY 442 453 12 SSF56672 none none none

1 Localization

Analysis Start End Length
TMHMM 7 26 19

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting