Protein : Qrob_P0437610.2 Q. robur
Protein Identifier  ? Qrob_P0437610.2 Organism . Name  Quercus robur
Score  86.1 Score Type  egn
Protein Description  (M=2) 1.4.3.5 - Pyridoxal 5'-phosphate synthase. Code Enzyme  EC:1.4.3.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 128  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0010181 FMN binding Interacting selectively and non-covalently with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
GO:0004733 pyridoxamine-phosphate oxidase activity Catalysis of the reaction: pyridoxamine 5'-phosphate + H2O + O2 = pyridoxal 5'-phosphate + NH3 + hydrogen peroxide.
GO:0008615 pyridoxine biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101306166 1 112 + 112 Gaps:1 56.50 200 81.42 6e-63 pyridoxine/pyridoxamine 5'-phosphate oxidase 2-like
blastp_kegg lcl|tcc:TCM_005113 1 112 + 112 Gaps:1 56.06 198 80.18 3e-60 Pyridoxamine 5'-phosphate oxidase family protein isoform 1
blastp_kegg lcl|pop:POPTR_0002s17450g 1 115 + 115 none 57.79 199 75.65 3e-60 POPTRDRAFT_644606 pyridoxine 5'-phosphate oxidase-related family protein
blastp_kegg lcl|pop:POPTR_0014s09620g 1 112 + 112 Gaps:2 55.84 197 80.00 3e-60 POPTRDRAFT_824039 pyridoxine 5'-phosphate oxidase-related family protein
blastp_kegg lcl|pmum:103332181 1 112 + 112 Gaps:1 56.50 200 77.88 7e-60 pyridoxine/pyridoxamine 5'-phosphate oxidase 2
blastp_kegg lcl|cic:CICLE_v10022329mg 1 112 + 112 none 56.00 200 73.21 3e-59 hypothetical protein
blastp_kegg lcl|cit:102630612 1 112 + 112 none 56.00 200 73.21 3e-59 pyridoxine/pyridoxamine 5'-phosphate oxidase 2-like
blastp_kegg lcl|pper:PRUPE_ppa011702mg 1 112 + 112 Gaps:1 56.50 200 76.11 1e-58 hypothetical protein
blastp_kegg lcl|sly:101248203 7 112 + 106 none 50.48 210 77.36 1e-58 pyridoxine/pyridoxamine 5'-phosphate oxidase 2-like
blastp_kegg lcl|sot:102599794 7 112 + 106 none 43.27 245 76.42 1e-57 pyridoxine/pyridoxamine 5'-phosphate oxidase 2-like
blastp_pdb 2i51_B 4 101 + 98 none 50.26 195 45.92 3e-28 mol:protein length:195 Uncharacterized conserved protein of COG5135
blastp_pdb 2i51_A 4 101 + 98 none 50.26 195 45.92 3e-28 mol:protein length:195 Uncharacterized conserved protein of COG5135
blastp_uniprot_sprot sp|Q9ZPY1|PPOX2_ARATH 1 112 + 112 Gaps:1 56.06 198 72.07 7e-56 Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS Arabidopsis thaliana GN PPOX2 PE 1 SV 2
blastp_uniprot_sprot sp|P53210|YG1B_YEAST 6 95 + 90 Gaps:20 35.69 297 34.91 9e-10 Uncharacterized protein YGR017W OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN YGR017W PE 1 SV 1
blastp_uniprot_sprot sp|B1YVG1|PDXH_BURA4 21 105 + 85 Gaps:2 38.79 214 33.73 3e-07 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia ambifaria (strain MC40-6) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|A9AGI1|PDXH_BURM1 21 105 + 85 Gaps:2 38.79 214 32.53 3e-07 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia multivorans (strain ATCC 17616 / 249) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|Q0BCF1|PDXH_BURCM 21 105 + 85 Gaps:2 38.79 214 33.73 3e-07 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|B1JXH8|PDXH_BURCC 21 105 + 85 Gaps:2 38.79 214 33.73 3e-06 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia cenocepacia (strain MC0-3) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|A0K9Z1|PDXH_BURCH 21 105 + 85 Gaps:2 38.79 214 33.73 3e-06 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia cenocepacia (strain HI2424) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|Q1BU45|PDXH_BURCA 21 105 + 85 Gaps:2 38.79 214 33.73 3e-06 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia cenocepacia (strain AU 1054) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|B4E9I1|PDXH_BURCJ 21 105 + 85 Gaps:2 38.79 214 33.73 3e-06 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) GN pdxH PE 3 SV 1
blastp_uniprot_sprot sp|Q65QT9|PDXH_MANSM 21 105 + 85 Gaps:2 39.34 211 26.51 4e-06 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS Mannheimia succiniciproducens (strain MBEL55E) GN pdxH PE 3 SV 1
rpsblast_cdd gnl|CDD|205063 6 100 + 95 Gaps:3 100.00 98 46.94 4e-36 pfam12766 Pyridox_oxase_2 Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This region is the flavoprotein FMN-binding domain.
rpsblast_cdd gnl|CDD|188541 6 110 + 105 Gaps:1 56.22 185 45.19 1e-33 TIGR04026 PPOX_FMN_cyano PPOX class probable FMN-dependent enzyme alr4036 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420 so it is probable that all members bind FMN rather than F420.
rpsblast_cdd gnl|CDD|34736 5 106 + 102 Gaps:15 47.76 245 33.33 2e-20 COG5135 COG5135 Uncharacterized conserved protein [Function unknown].
rpsblast_cdd gnl|CDD|30608 30 105 + 76 Gaps:2 34.58 214 27.03 6e-08 COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism].
rpsblast_kog gnl|CDD|39758 1 107 + 107 Gaps:20 49.80 251 35.20 3e-24 KOG4558 KOG4558 KOG4558 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37797 31 105 + 75 Gaps:1 32.46 228 24.32 5e-07 KOG2586 KOG2586 KOG2586 Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 105 100 PTHR10851:SF0 none none none
SUPERFAMILY 7 105 99 SSF50475 none none IPR012349
Gene3D 6 108 103 G3DSA:2.30.110.10 none none IPR012349
Pfam 7 99 93 PF12766 none Pyridoxamine 5'-phosphate oxidase IPR024624
PANTHER 6 105 100 PTHR10851 "KEGG:00750+1.4.3.5","MetaCyc:PWY-7204","MetaCyc:PWY-7282","UniPathway:UPA00190","UniPathway:UPA00190";signature_desc=PYRIDOXINE-5-PHOSPHATE OXIDASE none IPR000659

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting