Protein : Qrob_P0433740.2 Q. robur

Protein Identifier  ? Qrob_P0433740.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) K00654 - serine palmitoyltransferase [EC:2.3.1.50] Code Enzyme  EC:2.3.1.50
Gene Prediction Quality  validated Protein length 

Sequence

Length: 443  
Kegg Orthology  K00654

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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100249169 17 442 + 426 none 87.12 489 93.43 0.0 serine palmitoyltransferase 2-like
blastp_kegg lcl|pper:PRUPE_ppa004890mg 17 433 + 417 none 85.63 487 94.24 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s10630g 17 442 + 426 none 87.12 489 92.25 0.0 POPTRDRAFT_834365 serine palmitoyltransferase family protein
blastp_kegg lcl|tcc:TCM_017312 17 438 + 422 none 86.30 489 93.36 0.0 Long chain base2 isoform 1
blastp_kegg lcl|cmo:103502283 17 435 + 419 none 85.51 490 94.51 0.0 long chain base biosynthesis protein 2a
blastp_kegg lcl|csv:101209026 17 435 + 419 none 85.51 490 94.51 0.0 long chain base biosynthesis protein 2a-like
blastp_kegg lcl|gmx:100803194 17 442 + 426 Gaps:1 87.14 490 89.93 0.0 long chain base biosynthesis protein 2a-like
blastp_kegg lcl|cic:CICLE_v10017847mg 17 442 + 426 none 87.12 489 90.38 0.0 hypothetical protein
blastp_kegg lcl|cit:102617633 17 442 + 426 none 87.12 489 90.38 0.0 long chain base biosynthesis protein 2a-like
blastp_kegg lcl|gmx:100789635 17 442 + 426 none 87.12 489 90.14 0.0 long chain base biosynthesis protein 2a-like
blastp_pdb 3a2b_A 54 416 + 363 Gaps:18 86.68 398 31.59 1e-56 mol:protein length:398 Serine palmitoyltransferase
blastp_pdb 3tqx_B 52 421 + 370 Gaps:20 89.22 399 32.87 2e-54 mol:protein length:399 2-amino-3-ketobutyrate coenzyme A ligase
blastp_pdb 3tqx_A 52 421 + 370 Gaps:20 89.22 399 32.87 2e-54 mol:protein length:399 2-amino-3-ketobutyrate coenzyme A ligase
blastp_pdb 2w8t_A 58 422 + 365 Gaps:18 81.73 427 33.52 2e-51 mol:protein length:427 SERINE PALMITOYLTRANSFERASE
blastp_pdb 1fc4_B 53 422 + 370 Gaps:23 88.53 401 31.83 6e-51 mol:protein length:401 2-AMINO-3-KETOBUTYRATE CONENZYME A LIGASE
blastp_pdb 1fc4_A 53 422 + 370 Gaps:23 88.53 401 31.83 6e-51 mol:protein length:401 2-AMINO-3-KETOBUTYRATE CONENZYME A LIGASE
blastp_pdb 2w8v_A 58 422 + 365 Gaps:18 81.73 427 33.24 4e-50 mol:protein length:427 SERINE PALMITOYLTRANSFERASE
blastp_pdb 2jg2_A 58 422 + 365 Gaps:18 82.70 422 33.24 6e-50 mol:protein length:422 SERINE PALMITOYLTRANSFERASE
blastp_pdb 2xbn_A 58 422 + 365 Gaps:18 81.73 427 33.24 6e-50 mol:protein length:427 SERINE PALMITOYLTRANSFERASE
blastp_pdb 2w8j_A 58 422 + 365 Gaps:18 81.73 427 33.24 6e-50 mol:protein length:427 SERINE PALMITOYLTRANSFERASE
blastp_uniprot_sprot sp|Q9LSZ9|LCB2A_ARATH 14 442 + 429 none 87.73 489 85.78 0.0 Long chain base biosynthesis protein 2a OS Arabidopsis thaliana GN LCB2a PE 1 SV 1
blastp_uniprot_sprot sp|Q2R3K3|LCB2A_ORYSJ 17 431 + 415 none 85.04 488 88.19 0.0 Long chain base biosynthesis protein 2a OS Oryza sativa subsp. japonica GN Os11g0516000 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M304|LCB2B_ARATH 14 442 + 429 none 87.73 489 84.38 0.0 Long chain base biosynthesis protein 2b OS Arabidopsis thaliana GN LCB2b PE 1 SV 1
blastp_uniprot_sprot sp|Q5JK39|LCB2D_ORYSJ 17 441 + 425 none 86.91 489 84.47 0.0 Long chain base biosynthesis protein 2d OS Oryza sativa subsp. japonica GN Os01g0928800 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RYL0|LCB2C_ORYSJ 12 441 + 430 none 86.52 497 81.86 0.0 Long chain base biosynthesis protein 2c OS Oryza sativa subsp. japonica GN Os01g0928700 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RYL1|LCB2B_ORYSJ 12 428 + 417 none 83.57 499 79.38 0.0 Long chain base biosynthesis protein 2b OS Oryza sativa subsp. japonica GN Os01g0928600 PE 2 SV 1
blastp_uniprot_sprot sp|P97363|SPTC2_MOUSE 10 424 + 415 Gaps:2 74.11 560 55.18 4e-159 Serine palmitoyltransferase 2 OS Mus musculus GN Sptlc2 PE 2 SV 2
blastp_uniprot_sprot sp|O15270|SPTC2_HUMAN 10 424 + 415 Gaps:2 73.84 562 54.94 8e-159 Serine palmitoyltransferase 2 OS Homo sapiens GN SPTLC2 PE 1 SV 1
blastp_uniprot_sprot sp|O54694|SPTC2_CRIGR 10 424 + 415 Gaps:2 74.11 560 55.18 3e-158 Serine palmitoyltransferase 2 OS Cricetulus griseus GN SPTLC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54EX5|SPTC2_DICDI 17 424 + 408 Gaps:1 83.47 490 52.32 3e-156 Serine palmitoyltransferase 2 OS Dictyostelium discoideum GN sptB PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 261 270 10 PS00599 none Aminotransferases class-II pyridoxal-phosphate attachment site. IPR001917
Pfam 55 413 359 PF00155 none Aminotransferase class I and II IPR004839
Gene3D 77 298 222 G3DSA:3.40.640.10 none none IPR015421
PANTHER 17 434 418 PTHR13693 none none none
Gene3D 299 418 120 G3DSA:3.90.1150.10 none none IPR015422
PANTHER 17 434 418 PTHR13693:SF3 none none none
SUPERFAMILY 49 418 370 SSF53383 none none IPR015424

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting