Protein : Qrob_P0433300.2 Q. robur
Protein Identifier  ? Qrob_P0433300.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K05575 - NADH dehydrogenase I subunit 4 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 689  
Kegg Orthology  K05575
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0 Synonyms

12 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.
GO:0009773 photosynthetic electron transport in photosystem I A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_7g021720 114 686 + 573 Gaps:14 100.00 587 82.28 0.0 Photosystem I iron-sulfur center
blastp_kegg lcl|cam:101489191 114 686 + 573 Gaps:14 100.00 587 83.48 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic-like
blastp_kegg lcl|mtr:MTR_4g006120 114 686 + 573 Gaps:28 100.00 573 82.90 0.0 NADH dehydrogenase subunit
blastp_kegg lcl|pmum:18668091 191 687 + 497 none 99.40 500 90.54 0.0 ndhD CP95_p015 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|pper:PrpeC_p072 191 687 + 497 none 99.40 500 90.54 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|fve:10251583 191 687 + 497 none 99.40 500 90.14 0.0 ndhD FvH4_C0105 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|sly:3950410 190 687 + 498 none 99.60 500 86.35 0.0 ndhD LyesC2p017 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|rcu:RCOM_ORF00106 184 687 + 504 none 99.60 506 85.52 0.0 ndhD NADH dehydrogenase subunit 4
blastp_kegg lcl|sot:4099905 191 687 + 497 none 99.40 500 86.32 0.0 ndhD ndh4 SotuCp075 NADH dehydrogenase subunit 4
blastp_kegg lcl|cit:4271114 191 688 + 498 none 99.80 499 85.74 0.0 ndhD CisiCp073 NADH dehydrogenase subunit 4
blastp_pdb 3rko_C 194 685 + 492 Gaps:36 96.66 509 34.96 7e-76 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 194 685 + 492 Gaps:36 96.66 509 34.96 7e-76 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3lw5_C 114 186 + 73 Gaps:4 85.19 81 95.65 1e-42 mol:protein length:81 Photosystem I iron-sulfur center
blastp_pdb 2wsf_C 114 186 + 73 Gaps:4 85.19 81 95.65 1e-42 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wse_C 114 186 + 73 Gaps:4 85.19 81 95.65 1e-42 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wsc_C 114 186 + 73 Gaps:4 85.19 81 95.65 1e-42 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2o01_C 115 186 + 72 Gaps:4 85.00 80 95.59 9e-42 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 3pcq_C 115 186 + 72 Gaps:4 85.00 80 86.76 7e-40 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 1jb0_C 115 186 + 72 Gaps:4 85.00 80 86.76 7e-40 mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 1k0t_A 115 186 + 72 Gaps:4 85.00 80 88.24 8e-40 mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I
blastp_uniprot_sprot sp|Q68RV6|NU4C_PANGI 191 687 + 497 none 99.40 500 86.32 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Panax ginseng GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2A7B8|NU4C_SOLLC 191 687 + 497 none 99.40 500 86.32 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum lycopersicum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q09WW8|NU4C_MORIN 191 687 + 497 none 99.40 500 86.92 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Morus indica GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2VED0|NU4C_SOLTU 191 687 + 497 none 99.40 500 86.12 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum tuberosum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q33BX2|NU4C_NICTO 191 687 + 497 none 99.40 500 86.12 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tomentosiformis GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|B1NWJ9|NU4C_MANES 191 687 + 497 none 99.40 500 86.32 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Manihot esculenta GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8U7|NU4C_ATRBE 191 687 + 497 none 99.40 500 85.92 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Atropa belladonna GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9R2|NU4C_DAUCA 191 686 + 496 none 99.20 500 85.48 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Daucus carota GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|P06262|NU4C_TOBAC 191 687 + 497 none 99.40 500 86.12 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tabacum GN ndhD PE 2 SV 2
blastp_uniprot_sprot sp|Q3C1Q4|NU4C_NICSY 191 687 + 497 none 99.40 500 86.12 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana sylvestris GN ndhD PE 3 SV 1

55 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 324 344 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 583 602 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 196 685 490 TIGR01972 none NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M IPR010227
Phobius 673 688 16 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 192 212 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 632 650 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 121 177 57 G3DSA:3.30.70.20 none none none
SUPERFAMILY 118 192 75 SSF54862 none none none
TIGRFAM 115 186 72 TIGR03048 "MetaCyc:PWY-101","MetaCyc:PWY-6785" PS_I_psaC: photosystem I iron-sulfur protein PsaC IPR017491
Phobius 494 513 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 400 423 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 193 687 495 PTHR22773:SF74 none none none
Phobius 559 577 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 381 399 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 483 493 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 224 244 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 519 538 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 514 518 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Hamap 190 688 499 MF_00491 none NAD(P)H-quinone oxidoreductase chain 4 [ndhD]. IPR022997
Phobius 319 323 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 465 482 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 539 558 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 213 223 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 152 181 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Pfam 320 592 273 PF00361 "Reactome:REACT_6305" NADH-Ubiquinone/plastoquinone (complex I), various chains IPR001750
ProSitePatterns 161 172 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
PANTHER 193 687 495 PTHR22773 none none none
Phobius 301 318 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 245 273 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 345 355 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

18 Localization

Analysis Start End Length
TMHMM 580 602 22
TMHMM 609 631 22
TMHMM 191 213 22
TMHMM 520 542 22
TMHMM 273 295 22
TMHMM 59 81 22
TMHMM 493 510 17
TMHMM 464 486 22
TMHMM 5 22 17
TMHMM 323 345 22
TMHMM 554 576 22
TMHMM 429 451 22
TMHMM 302 319 17
TMHMM 27 46 19
TMHMM 220 242 22
TMHMM 357 379 22
TMHMM 651 673 22
TMHMM 394 416 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting