Protein : Qrob_P0432020.2 Q. robur
Protein Identifier  ? Qrob_P0432020.2 Organism . Name  Quercus robur
Score  89.0 Score Type  egn
Protein Description  (M=2) PTHR10871:SF4 - 30S RIBOSOMAL PROTEIN S13P/S18E Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 780  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103491545 1 778 + 778 Gaps:9 99.85 673 88.54 0.0 DNA topoisomerase 6 subunit B
blastp_kegg lcl|pop:POPTR_0003s22040g 1 777 + 777 Gaps:10 99.70 673 88.52 0.0 hypothetical protein
blastp_kegg lcl|csv:101227937 1 778 + 778 Gaps:32 99.86 696 85.04 0.0 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|csv:101210021 1 778 + 778 Gaps:32 99.86 696 85.04 0.0 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|tcc:TCM_040492 7 779 + 773 Gaps:9 99.70 669 88.31 0.0 Topoisomerase 6 subunit B isoform 1
blastp_kegg lcl|gmx:100809558 1 779 + 779 Gaps:10 100.00 673 86.18 0.0 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|mtr:MTR_2g098510 6 779 + 774 Gaps:9 99.55 671 85.93 0.0 DNA topoisomerase 6 subunit B
blastp_kegg lcl|cam:101514181 7 779 + 773 Gaps:9 99.70 669 86.36 0.0 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|rcu:RCOM_1576900 1 777 + 777 Gaps:26 99.70 656 88.07 0.0 Type II DNA topoisomerase VI subunit B putative (EC:5.99.1.3)
blastp_kegg lcl|pvu:PHAVU_005G150500g 4 779 + 776 Gaps:10 99.70 672 86.42 0.0 hypothetical protein
blastp_pdb 2zbk_H 35 618 + 584 Gaps:29 94.91 530 39.56 2e-79 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_F 35 618 + 584 Gaps:29 94.91 530 39.56 2e-79 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_D 35 618 + 584 Gaps:29 94.91 530 39.56 2e-79 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_B 35 618 + 584 Gaps:29 94.91 530 39.56 2e-79 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2hkj_A 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5c_B 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5c_A 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5b_B 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5b_A 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5a_B 35 574 + 540 Gaps:22 97.65 469 40.17 3e-77 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_uniprot_sprot sp|Q9C5V6|TOP6B_ARATH 12 778 + 767 Gaps:11 98.81 670 83.38 0.0 DNA topoisomerase 6 subunit B OS Arabidopsis thaliana GN TOP6B PE 1 SV 1
blastp_uniprot_sprot sp|B8BDQ4|TOP6B_ORYSI 29 777 + 749 Gaps:9 92.53 696 79.35 0.0 DNA topoisomerase 6 subunit B OS Oryza sativa subsp. indica GN TOP6B PE 1 SV 1
blastp_uniprot_sprot sp|C3NHT6|TOP6B_SULIN 35 618 + 584 Gaps:29 94.91 530 39.56 5e-80 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3NDW7|TOP6B_SULIY 35 618 + 584 Gaps:29 94.91 530 39.56 1e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3MYN1|TOP6B_SULIM 35 618 + 584 Gaps:29 94.91 530 39.56 1e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3MPN7|TOP6B_SULIL 35 618 + 584 Gaps:29 94.91 530 39.56 1e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C4KGX9|TOP6B_SULIK 35 618 + 584 Gaps:29 94.91 530 39.56 1e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3N5B3|TOP6B_SULIA 35 618 + 584 Gaps:29 94.91 530 39.56 1e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain M.16.27) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|Q9YE64|TOP6B_AERPE 149 633 + 485 Gaps:32 80.81 568 34.20 2e-79 Type 2 DNA topoisomerase 6 subunit B OS Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN top6B PE 3 SV 2
blastp_uniprot_sprot sp|O05207|TOP6B_SULSH 35 618 + 584 Gaps:29 94.91 530 39.56 6e-79 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus shibatae GN top6B PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 404 582 179 PD013790 none TOPOISOMERASE ISOMERASE SUBUNIT DNA B VI TYPE II NUCLEOTIDE-BINDING ATP-BINDING IPR015320
SUPERFAMILY 156 296 141 SSF55874 none none IPR003594
Gene3D 403 635 233 G3DSA:3.30.230.10 none none IPR014721
PANTHER 23 536 514 PTHR10871:SF4 none none IPR005734
Pfam 404 570 167 PF09239 none Topoisomerase VI B subunit, transducer IPR015320
Coils 109 130 22 Coil none none none
Pfam 56 211 156 PF02518 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594
SUPERFAMILY 326 398 73 SSF46946 none none IPR010979
Hamap 28 614 587 MF_00322 none Type 2 DNA topoisomerase 6 subunit B [top6B]. IPR005734
Gene3D 30 87 58 G3DSA:3.30.565.10 none none IPR003594
Gene3D 154 295 142 G3DSA:3.30.565.10 none none IPR003594
Gene3D 325 401 77 G3DSA:1.10.8.50 none none none
PANTHER 23 536 514 PTHR10871 none none none
SUPERFAMILY 403 571 169 SSF54211 none none IPR020568
Coils 683 704 22 Coil none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting