Protein : Qrob_P0432010.2 Q. robur
Protein Identifier  ? Qrob_P0432010.2 Organism . Name  Quercus robur
Score  10.0 Score Type  egn
Protein Description  (M=2) PTHR10871:SF4 - 30S RIBOSOMAL PROTEIN S13P/S18E Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 252  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1576900 1 240 + 240 Gaps:2 36.28 656 87.82 6e-146 Type II DNA topoisomerase VI subunit B putative (EC:5.99.1.3)
blastp_kegg lcl|csv:101227937 1 240 + 240 Gaps:2 34.20 696 88.66 1e-145 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|csv:101210021 1 240 + 240 Gaps:2 34.20 696 88.66 1e-145 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|cmo:103491545 1 240 + 240 Gaps:2 35.36 673 88.66 1e-145 DNA topoisomerase 6 subunit B
blastp_kegg lcl|pop:POPTR_0003s22040g 1 240 + 240 Gaps:2 35.36 673 87.39 7e-144 hypothetical protein
blastp_kegg lcl|vvi:100265632 1 240 + 240 Gaps:2 36.28 656 88.24 7e-143 DNA topoisomerase 6 subunit B-like
blastp_kegg lcl|pper:PRUPE_ppa002281mg 1 240 + 240 Gaps:2 34.39 692 86.13 1e-142 hypothetical protein
blastp_kegg lcl|pmum:103341816 1 240 + 240 Gaps:2 34.39 692 85.71 8e-142 DNA topoisomerase 6 subunit B
blastp_kegg lcl|tcc:TCM_040492 7 240 + 234 Gaps:2 34.68 669 88.79 1e-141 Topoisomerase 6 subunit B isoform 1
blastp_kegg lcl|gmx:100809558 1 240 + 240 Gaps:2 35.36 673 86.13 1e-141 DNA topoisomerase 6 subunit B-like
blastp_pdb 2zbk_H 35 240 + 206 none 26.42 530 45.71 2e-15 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_F 35 240 + 206 none 26.42 530 45.71 2e-15 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_D 35 240 + 206 none 26.42 530 45.71 2e-15 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2zbk_B 35 240 + 206 none 26.42 530 45.71 2e-15 mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
blastp_pdb 2hkj_A 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5c_B 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5c_A 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5b_B 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5b_A 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_pdb 1z5a_B 35 240 + 206 none 29.85 469 45.71 2e-15 mol:protein length:469 Type II DNA topoisomerase VI subunit B
blastp_uniprot_sprot sp|Q9C5V6|TOP6B_ARATH 12 240 + 229 Gaps:2 33.88 670 81.50 2e-124 DNA topoisomerase 6 subunit B OS Arabidopsis thaliana GN TOP6B PE 1 SV 1
blastp_uniprot_sprot sp|B8BDQ4|TOP6B_ORYSI 29 240 + 212 Gaps:1 30.32 696 82.46 2e-115 DNA topoisomerase 6 subunit B OS Oryza sativa subsp. indica GN TOP6B PE 1 SV 1
blastp_uniprot_sprot sp|Q9YE64|TOP6B_AERPE 149 247 + 99 none 17.43 568 38.38 3e-17 Type 2 DNA topoisomerase 6 subunit B OS Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN top6B PE 3 SV 2
blastp_uniprot_sprot sp|C3NHT6|TOP6B_SULIN 35 240 + 206 none 26.42 530 45.71 3e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|A4YHK7|TOP6B_METS5 35 240 + 206 none 26.37 531 44.29 3e-15 Type 2 DNA topoisomerase 6 subunit B OS Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|Q971T2|TOP6B_SULTO 35 238 + 204 none 25.94 532 44.93 4e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3NDW7|TOP6B_SULIY 35 240 + 206 none 26.42 530 45.71 6e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3MYN1|TOP6B_SULIM 35 240 + 206 none 26.42 530 45.71 6e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C3MPN7|TOP6B_SULIL 35 240 + 206 none 26.42 530 45.71 6e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN top6B PE 3 SV 1
blastp_uniprot_sprot sp|C4KGX9|TOP6B_SULIK 35 240 + 206 none 26.42 530 45.71 6e-15 Type 2 DNA topoisomerase 6 subunit B OS Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN top6B PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 23 240 218 PTHR10871:SF4 none none IPR005734
Pfam 56 204 149 PF02518 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594
Coils 109 130 22 Coil none none none
Gene3D 154 242 89 G3DSA:3.30.565.10 none none IPR003594
Gene3D 30 87 58 G3DSA:3.30.565.10 none none IPR003594
SUPERFAMILY 156 221 66 SSF55874 none none IPR003594
PANTHER 23 240 218 PTHR10871 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting