Protein : Qrob_P0429820.2 Q. robur
Protein Identifier  ? Qrob_P0429820.2 Organism . Name  Quercus robur
Score  99.3 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 403  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|eus:EUTSA_v10012801mg 46 395 + 350 Gaps:29 52.57 719 48.41 6e-70 hypothetical protein
blastp_kegg lcl|ath:AT5G53130 26 395 + 370 Gaps:32 52.93 716 48.55 1e-68 CNGC1 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|crb:CARUB_v10025973mg 26 395 + 370 Gaps:32 53.21 716 47.24 9e-68 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_918383 26 395 + 370 Gaps:32 53.07 716 47.63 1e-67 hypothetical protein
blastp_kegg lcl|brp:103852055 25 395 + 371 Gaps:36 53.45 711 47.37 3e-67 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|rcu:RCOM_1579800 27 400 + 374 Gaps:36 45.82 838 48.44 1e-66 Cyclic nucleotide-gated ion channel putative
blastp_kegg lcl|cmo:103482956 5 400 + 396 Gaps:41 57.44 712 46.21 2e-66 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|csv:101227274 5 400 + 396 Gaps:41 57.28 714 45.72 2e-65 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|csv:101221781 5 400 + 396 Gaps:41 57.36 713 45.72 2e-65 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|tcc:TCM_015364 44 400 + 357 Gaps:28 51.89 713 48.65 1e-64 Cyclic nucleotide gated channel 1 isoform 1
blastp_pdb 1wgp_A 251 372 + 122 Gaps:6 84.67 137 47.41 8e-25 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 26 395 + 370 Gaps:32 52.93 716 48.55 4e-70 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 27 372 + 346 Gaps:25 51.48 711 41.26 4e-52 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 44 395 + 352 Gaps:28 49.53 747 40.81 3e-51 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 24 395 + 372 Gaps:32 54.31 696 40.21 7e-49 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 44 395 + 352 Gaps:30 49.80 733 41.37 1e-48 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 46 393 + 348 Gaps:30 50.14 706 40.96 1e-46 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 44 395 + 352 Gaps:34 50.35 717 40.17 5e-46 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 16 395 + 380 Gaps:42 53.12 753 39.25 7e-46 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 44 395 + 352 Gaps:29 49.46 738 39.18 1e-44 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SKD6|CNG11_ARATH 54 374 + 321 Gaps:27 51.05 621 41.96 2e-38 Cyclic nucleotide-gated ion channel 11 OS Arabidopsis thaliana GN CNGC11 PE 2 SV 2
rpsblast_cdd gnl|CDD|28920 251 372 + 122 Gaps:16 92.17 115 22.64 8e-07 cd00038 CAP_ED effector domain of the CAP family of transcription factors members include CAP (or cAMP receptor protein (CRP)) which binds cAMP FNR (fumarate and nitrate reduction) which uses an iron-sulfur cluster to sense oxygen) and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues the best studied is the prokaryotic catabolite gene activator CAP where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded antiparallel beta-barrel structure three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel CooA is a homodimeric transcription factor that belongs to CAP family cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain cAPK's are composed of two different subunits a catalytic chain and a regulatory chain which contains both copies of the domain cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section also found in vertebrate cyclic nucleotide-gated ion-channels.
rpsblast_kog gnl|CDD|35719 24 371 + 348 Gaps:27 45.67 727 35.54 1e-45 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 46 372 327 PTHR10217:SF465 none none none
Phobius 1 59 59 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 251 385 135 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 205 232 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 89 233 145 G3DSA:1.10.287.70 none none none
Phobius 60 82 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 248 372 125 SSF51206 none none IPR018490
Phobius 141 161 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 251 372 122 G3DSA:2.60.120.10 none none IPR014710
Phobius 116 140 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 270 371 102 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 94 115 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 233 402 170 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 162 204 43 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 83 93 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 46 372 327 PTHR10217 none none none
ProSiteProfiles 251 325 75 PS50042 none cAMP/cGMP binding motif profile. IPR000595
SUPERFAMILY 51 235 185 SSF81324 none none none
Pfam 101 317 217 PF00520 none Ion transport protein IPR005821

4 Localization

Analysis Start End Length
TMHMM 60 82 22
TMHMM 94 116 22
TMHMM 205 227 22
TMHMM 140 162 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting