Protein : Qrob_P0415690.2 Q. robur
Protein Identifier  ? Qrob_P0415690.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11145 - ribonuclease III family protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 148  
Kegg Orthology  K11145
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0312560 1 146 + 146 Gaps:6 61.29 248 62.50 4e-56 RNA binding protein putative
blastp_kegg lcl|cmo:103490018 1 146 + 146 Gaps:15 59.92 252 62.91 1e-52 uncharacterized LOC103490018
blastp_kegg lcl|mdm:103453560 1 146 + 146 Gaps:13 62.35 255 61.64 8e-51 uncharacterized LOC103453560
blastp_kegg lcl|csv:101205919 1 146 + 146 Gaps:15 61.63 245 61.59 9e-51 uncharacterized LOC101205919
blastp_kegg lcl|pxb:103957167 1 146 + 146 Gaps:13 62.35 255 61.64 1e-50 uncharacterized LOC103957167
blastp_kegg lcl|tcc:TCM_029029 15 146 + 132 Gaps:23 51.31 267 68.61 4e-50 RNA binding protein putative
blastp_kegg lcl|pvu:PHAVU_005G160100g 13 146 + 134 Gaps:8 56.43 241 64.71 4e-50 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s20750g 7 146 + 140 Gaps:7 58.13 246 65.73 1e-49 URF 4-related family protein
blastp_kegg lcl|cam:101508069 1 146 + 146 Gaps:11 58.89 253 61.07 2e-49 mini-ribonuclease 3-like
blastp_kegg lcl|pmum:103327714 1 146 + 146 Gaps:21 61.75 251 63.87 3e-49 uncharacterized LOC103327714
blastp_uniprot_sprot sp|P74327|MRNC_SYNY3 106 146 + 41 none 28.67 143 51.22 6e-07 Mini-ribonuclease 3 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN mrnC PE 3 SV 1
rpsblast_cdd gnl|CDD|32122 103 146 + 44 Gaps:1 34.09 132 37.78 3e-07 COG1939 COG1939 Uncharacterized protein conserved in bacteria [Function unknown].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 96 146 51 G3DSA:1.10.1520.10 none none IPR000999
SUPERFAMILY 100 146 47 SSF69065 none none IPR000999

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting