Protein : Qrob_P0413000.2 Q. robur
Protein Identifier  ? Qrob_P0413000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) K11254 - histone H4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 104  
Kegg Orthology  K11254
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100819422 1 103 + 103 none 72.54 142 100.00 4e-65 histone H4-like
blastp_kegg lcl|pop:POPTR_0168s00200g 1 103 + 103 none 66.45 155 100.00 5e-65 hypothetical protein
blastp_kegg lcl|gmx:100779904 1 103 + 103 none 66.03 156 100.00 6e-65 histone H4-like
blastp_kegg lcl|crb:CARUB_v10018191mg 1 103 + 103 none 69.13 149 100.00 1e-64 hypothetical protein
blastp_kegg lcl|gmx:100779597 1 103 + 103 none 64.38 160 100.00 2e-64 histone H4-like
blastp_kegg lcl|pvu:PHAVU_011G163600g 1 103 + 103 none 97.17 106 100.00 2e-64 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G164000g 1 103 + 103 none 81.75 126 100.00 2e-64 hypothetical protein
blastp_kegg lcl|dre:100005308 1 103 + 103 none 88.03 117 98.06 3e-64 histone H4-like
blastp_kegg lcl|ppp:PHYPADRAFT_152862 1 103 + 103 none 100.00 103 100.00 3e-64 HFO1503 histone H4
blastp_kegg lcl|ppp:PHYPADRAFT_196255 1 103 + 103 none 100.00 103 100.00 3e-64 HFO1501 hypothetical protein
blastp_pdb 3r45_B 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 3nqu_B 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 2f8n_F 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 2f8n_B 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 2cv5_F 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 2cv5_B 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Histone H4
blastp_pdb 2aro_H 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 HISTONE H4-VI
blastp_pdb 2aro_D 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 HISTONE H4-VI
blastp_pdb 1u35_F 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Hist1h4i protein
blastp_pdb 1u35_B 1 103 + 103 none 100.00 103 98.06 9e-66 mol:protein length:103 Hist1h4i protein
blastp_uniprot_sprot sp|P0CG89|H4_SOYBN 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Glycine max PE 3 SV 1
blastp_uniprot_sprot sp|Q76H85|H4_SILLA 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Silene latifolia GN SlH4 PE 3 SV 3
blastp_uniprot_sprot sp|P62788|H4_PEA 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Pisum sativum PE 1 SV 2
blastp_uniprot_sprot sp|P62787|H4_MAIZE 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Zea mays GN H4C7 PE 1 SV 2
blastp_uniprot_sprot sp|P62887|H4_LOLTE 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Lolium temulentum PE 3 SV 2
blastp_uniprot_sprot sp|Q6LAF3|H4_FLATR 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Flaveria trinervia GN hh4 PE 3 SV 3
blastp_uniprot_sprot sp|Q6WZ83|H4_EUCGL 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Eucalyptus globulus PE 3 SV 3
blastp_uniprot_sprot sp|Q6PMI5|H4_CHEMJ 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Chelidonium majus PE 3 SV 3
blastp_uniprot_sprot sp|P59259|H4_ARATH 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 OS Arabidopsis thaliana GN At1g07660 PE 1 SV 2
blastp_uniprot_sprot sp|P62785|H41_WHEAT 1 103 + 103 none 100.00 103 100.00 9e-66 Histone H4 variant TH011 OS Triticum aestivum PE 3 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 103 103 PTHR10484 none none none
ProSitePatterns 15 19 5 PS00047 none Histone H4 signature. IPR019809
SUPERFAMILY 3 102 100 SSF47113 none none IPR009072
SMART 16 90 75 SM00417 none Histone H4 IPR001951
Pfam 28 94 67 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
Gene3D 2 103 102 G3DSA:1.10.20.10 none none IPR009072
PRINTS 89 100 12 PR00623 none Histone H4 signature IPR001951
PRINTS 77 89 13 PR00623 none Histone H4 signature IPR001951
PRINTS 5 16 12 PR00623 none Histone H4 signature IPR001951
PRINTS 62 76 15 PR00623 none Histone H4 signature IPR001951
PRINTS 40 60 21 PR00623 none Histone H4 signature IPR001951
PRINTS 20 39 20 PR00623 none Histone H4 signature IPR001951

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting