Protein : Qrob_P0407910.2 Q. robur
Protein Identifier  ? Qrob_P0407910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 (PTHR13711:SF187) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 135  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257544 1 117 + 117 Gaps:22 89.10 156 65.47 2e-45 high mobility group B2 protein-like
blastp_kegg lcl|pmum:103340322 4 128 + 125 Gaps:17 95.24 147 67.86 2e-44 HMG1/2-like protein
blastp_kegg lcl|cic:CICLE_v10026715mg 1 117 + 117 Gaps:15 89.80 147 60.61 1e-42 hypothetical protein
blastp_kegg lcl|cit:102630695 1 117 + 117 Gaps:15 89.80 147 60.61 1e-42 HMG1/2-like protein-like
blastp_kegg lcl|pop:POPTR_0005s10440g 1 117 + 117 Gaps:20 88.19 144 66.93 1e-42 hypothetical protein
blastp_kegg lcl|mdm:103425027 4 117 + 114 Gaps:16 87.07 147 63.28 4e-41 high mobility group B protein 3-like
blastp_kegg lcl|pxb:103950156 4 117 + 114 Gaps:16 87.07 147 62.50 2e-40 high mobility group B protein 3-like
blastp_kegg lcl|pxb:103959177 4 128 + 125 Gaps:16 95.21 146 64.03 5e-40 high mobility group B protein 3-like
blastp_kegg lcl|mdm:103426765 30 118 + 89 Gaps:15 72.73 143 69.23 9e-40 high mobility group B protein 3-like
blastp_kegg lcl|mdm:103426764 4 128 + 125 Gaps:16 95.21 146 64.03 9e-40 high mobility group B protein 3-like
blastp_pdb 2yrq_A 6 96 + 91 Gaps:17 58.96 173 40.20 5e-09 mol:protein length:173 High mobility group protein B1
blastp_pdb 1j3c_A 35 96 + 62 Gaps:14 96.20 79 40.79 1e-08 mol:protein length:79 High mobility group protein 2
blastp_pdb 1j3d_A 35 96 + 62 Gaps:14 97.44 78 40.79 4e-08 mol:protein length:78 High mobility group protein 2
blastp_pdb 2gzk_A 27 96 + 70 Gaps:14 52.83 159 41.67 1e-07 mol:protein length:159 Sex-determining region on Y / HMGB1
blastp_pdb 1hmf_A 35 96 + 62 Gaps:14 98.70 77 42.11 2e-07 mol:protein length:77 HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
blastp_pdb 1hme_A 35 96 + 62 Gaps:14 98.70 77 42.11 2e-07 mol:protein length:77 HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
blastp_pdb 1nhn_A 38 96 + 59 Gaps:14 90.12 81 39.73 1e-05 mol:protein length:81 HIGH MOBILITY GROUP PROTEIN 1
blastp_pdb 1nhm_A 38 96 + 59 Gaps:14 90.12 81 39.73 1e-05 mol:protein length:81 HIGH MOBILITY GROUP PROTEIN 1
blastp_uniprot_sprot sp|Q42344|HMGB4_ARATH 1 131 + 131 Gaps:23 100.00 138 55.80 6e-37 High mobility group B protein 4 OS Arabidopsis thaliana GN HMGB4 PE 1 SV 1
blastp_uniprot_sprot sp|P26585|HMGL_SOYBN 1 105 + 105 Gaps:19 81.58 152 58.87 6e-35 HMG1/2-like protein OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|P93047|HMGB3_ARATH 1 117 + 117 Gaps:22 88.65 141 59.20 3e-34 High mobility group B protein 3 OS Arabidopsis thaliana GN HMGB3 PE 1 SV 1
blastp_uniprot_sprot sp|P40619|HMGL_IPONI 1 123 + 123 Gaps:21 91.67 144 56.82 1e-33 HMG1/2-like protein OS Ipomoea nil PE 2 SV 1
blastp_uniprot_sprot sp|O49596|HMGB2_ARATH 1 117 + 117 Gaps:19 88.89 144 56.25 1e-33 High mobility group B protein 2 OS Arabidopsis thaliana GN HMGB2 PE 1 SV 1
blastp_uniprot_sprot sp|P40620|HMGL_VICFA 1 117 + 117 Gaps:23 89.93 149 52.99 5e-31 HMG1/2-like protein OS Vicia faba PE 2 SV 1
blastp_uniprot_sprot sp|P27347|MNB1B_MAIZE 1 95 + 95 Gaps:18 70.70 157 53.15 2e-23 DNA-binding protein MNB1B OS Zea mays GN MNB1B PE 1 SV 1
blastp_uniprot_sprot sp|O49595|HMGB1_ARATH 28 121 + 94 Gaps:20 58.43 178 53.85 3e-23 High mobility group B protein 1 OS Arabidopsis thaliana GN HMGB1 PE 1 SV 1
blastp_uniprot_sprot sp|O49597|HMGB5_ARATH 1 108 + 108 Gaps:23 95.20 125 42.86 2e-21 High mobility group B protein 5 OS Arabidopsis thaliana GN HMGB5 PE 2 SV 1
blastp_uniprot_sprot sp|P40621|HMGL_WHEAT 1 95 + 95 Gaps:19 69.57 161 50.89 2e-17 HMG1/2-like protein OS Triticum aestivum PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 31 65 35 G3DSA:1.10.30.10 none none IPR009071
ProSiteProfiles 40 94 55 PS50118 none HMG boxes A and B DNA-binding domains profile. IPR009071
Gene3D 69 112 44 G3DSA:1.10.30.10 none none IPR009071
Pfam 40 67 28 PF00505 none HMG (high mobility group) box IPR009071
PANTHER 11 134 124 PTHR13711 none none none
Coils 76 97 22 Coil none none none
SMART 39 95 57 SM00398 none high mobility group IPR009071
PANTHER 11 134 124 PTHR13711:SF187 none none IPR031061
SUPERFAMILY 31 99 69 SSF47095 none none IPR009071

0 Localization

0 Qtllist

0 Targeting