Protein : Qrob_P0406480.2 Q. robur
Protein Identifier  ? Qrob_P0406480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K11275 - histone H1/5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 215  
Kegg Orthology  K11275
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026313 18 148 + 131 Gaps:10 58.02 212 65.85 8e-33 Winged-helix DNA-binding transcription factor family protein
blastp_kegg lcl|mdm:103417646 7 154 + 148 Gaps:32 70.30 165 63.79 2e-32 histone H1.2-like
blastp_kegg lcl|aly:ARALYDRAFT_481979 9 214 + 206 Gaps:54 83.33 264 53.64 2e-32 hypothetical protein
blastp_kegg lcl|mdm:103426337 14 154 + 141 Gaps:32 66.87 163 68.81 2e-31 histone H1.2-like
blastp_kegg lcl|pxb:103961347 14 214 + 201 Gaps:34 95.05 222 59.72 1e-30 histone H1.2-like
blastp_kegg lcl|ath:AT2G30620 9 118 + 110 Gaps:17 54.95 202 61.26 9e-30 histone H1.2
blastp_kegg lcl|mus:103982992 21 174 + 154 Gaps:24 62.26 212 59.85 6e-29 histone H1-like
blastp_kegg lcl|pmum:103318659 14 115 + 102 Gaps:13 53.74 214 65.22 6e-28 histone H1-like
blastp_kegg lcl|pper:PRUPE_ppa011342mg 14 115 + 102 Gaps:13 53.74 214 65.22 7e-28 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10017069mg 10 88 + 79 Gaps:1 28.68 272 73.08 1e-27 hypothetical protein
blastp_uniprot_sprot sp|P26569|H12_ARATH 9 214 + 206 Gaps:39 82.42 273 51.56 5e-33 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
blastp_uniprot_sprot sp|P27806|H1_WHEAT 12 89 + 78 Gaps:1 33.19 238 60.76 7e-25 Histone H1 OS Triticum aestivum PE 2 SV 2
blastp_uniprot_sprot sp|Q9M5W4|H1_EUPES 14 87 + 74 Gaps:2 33.19 229 76.32 9e-23 Histone H1 OS Euphorbia esula PE 2 SV 1
blastp_uniprot_sprot sp|P23444|H1_MAIZE 19 91 + 73 Gaps:1 30.08 246 62.16 9e-22 Histone H1 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|P37218|H1_SOLLC 13 88 + 76 none 26.48 287 67.11 2e-21 Histone H1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P08283|H1_PEA 15 89 + 75 none 28.30 265 65.33 6e-19 Histone H1 OS Pisum sativum PE 2 SV 1
blastp_uniprot_sprot sp|P26568|H11_ARATH 10 88 + 79 Gaps:1 28.47 274 67.95 2e-18 Histone H1.1 OS Arabidopsis thaliana GN At1g06760 PE 2 SV 1
blastp_uniprot_sprot sp|P40267|H1_SOLPN 14 205 + 192 Gaps:40 78.22 202 48.73 1e-17 Histone H1 OS Solanum pennellii PE 2 SV 1
blastp_uniprot_sprot sp|P54671|H1_DICDI 4 89 + 86 Gaps:3 47.22 180 48.24 4e-13 Histone H1 OS Dictyostelium discoideum GN H1 PE 1 SV 3
blastp_uniprot_sprot sp|Q08865|H12_VOLCA 14 157 + 144 Gaps:11 56.85 241 45.99 4e-12 Histone H1-II OS Volvox carteri GN H1-II PE 2 SV 3
rpsblast_cdd gnl|CDD|197772 19 84 + 66 none 100.00 66 62.12 9e-14 smart00526 H15 Domain in histone families 1 and 5.
rpsblast_cdd gnl|CDD|201291 21 85 + 65 Gaps:2 87.01 77 49.25 3e-07 pfam00538 Linker_histone linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.
rpsblast_cdd gnl|CDD|183391 89 184 + 96 Gaps:13 8.55 1228 27.62 9e-07 PRK12270 kgd alpha-ketoglutarate decarboxylase Reviewed.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 19 97 79 SSF46785 none none none
ProSiteProfiles 21 90 70 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
SMART 19 85 67 SM00526 none Domain in histone families 1 and 5 IPR005818
Pfam 21 89 69 PF00538 none linker histone H1 and H5 family IPR005818
Gene3D 17 93 77 G3DSA:1.10.10.10 none none IPR011991
PRINTS 35 52 18 PR00624 none Histone H5 signature IPR005819
PRINTS 8 29 22 PR00624 none Histone H5 signature IPR005819
PRINTS 107 121 15 PR00624 none Histone H5 signature IPR005819
PRINTS 137 154 18 PR00624 none Histone H5 signature IPR005819
PRINTS 159 178 20 PR00624 none Histone H5 signature IPR005819
PANTHER 7 214 208 PTHR11467 none none none

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting