Protein : Qrob_P0402930.2 Q. robur
Protein Identifier  ? Qrob_P0402930.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PTHR22884//PTHR22884:SF278 - SET DOMAIN PROTEINS // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 673  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030786 1 655 + 655 Gaps:57 82.10 821 52.37 0.0 RING/FYVE/PHD zinc finger superfamily protein putative isoform 1
blastp_kegg lcl|cic:CICLE_v10007504mg 1 655 + 655 Gaps:87 79.45 793 56.83 0.0 hypothetical protein
blastp_kegg lcl|cit:102609182 1 654 + 654 Gaps:97 80.07 823 55.08 0.0 uncharacterized LOC102609182
blastp_kegg lcl|rcu:RCOM_0546900 1 654 + 654 Gaps:83 79.48 892 48.94 0.0 hypothetical protein
blastp_kegg lcl|cam:101515729 1 654 + 654 Gaps:65 81.97 821 48.44 0.0 uncharacterized LOC101515729
blastp_kegg lcl|gmx:100807139 23 654 + 632 Gaps:61 78.67 830 49.92 0.0 uncharacterized LOC100807139
blastp_kegg lcl|gmx:100783208 1 654 + 654 Gaps:58 82.17 830 47.36 0.0 uncharacterized LOC100783208
blastp_kegg lcl|pop:POPTR_0001s36940g 1 669 + 669 Gaps:89 81.95 798 49.39 0.0 POPTRDRAFT_753204 PHD finger family protein
blastp_kegg lcl|pvu:PHAVU_008G272900g 1 654 + 654 Gaps:66 82.28 824 48.23 2e-178 hypothetical protein
blastp_kegg lcl|pmum:103326553 1 655 + 655 Gaps:61 83.35 925 56.29 7e-164 uncharacterized LOC103326553
blastp_pdb 2e6r_A 249 308 + 60 Gaps:2 63.04 92 43.10 7e-07 mol:protein length:92 Jumonji/ARID domain-containing protein 1D
blastp_pdb 1f62_A 249 298 + 50 Gaps:1 96.08 51 42.86 9e-07 mol:protein length:51 TRANSCRIPTION FACTOR WSTF
blastp_pdb 2puy_B 249 294 + 46 Gaps:4 70.00 60 47.62 3e-06 mol:protein length:60 PHD finger protein 21A
blastp_pdb 2puy_A 249 294 + 46 Gaps:4 70.00 60 47.62 3e-06 mol:protein length:60 PHD finger protein 21A
blastp_uniprot_sprot sp|Q5PNS0|Y3228_ARATH 202 373 + 172 Gaps:3 36.31 482 49.71 2e-46 PHD finger protein At3g20280 OS Arabidopsis thaliana GN At3g20280 PE 2 SV 1
blastp_uniprot_sprot sp|Q92794|KAT6A_HUMAN 248 348 + 101 Gaps:5 5.29 2004 33.02 6e-09 Histone acetyltransferase KAT6A OS Homo sapiens GN KAT6A PE 1 SV 2
blastp_uniprot_sprot sp|Q5TKR9|KAT6A_RAT 248 349 + 102 Gaps:5 5.36 1998 32.71 7e-09 Histone acetyltransferase KAT6A OS Rattus norvegicus GN Kat6a PE 1 SV 2
blastp_uniprot_sprot sp|Q8BZ21|KAT6A_MOUSE 248 349 + 102 Gaps:5 5.34 2003 31.78 2e-08 Histone acetyltransferase KAT6A OS Mus musculus GN Kat6a PE 1 SV 2
blastp_uniprot_sprot sp|Q8WYB5|KAT6B_HUMAN 248 323 + 76 Gaps:1 3.71 2073 33.77 7e-08 Histone acetyltransferase KAT6B OS Homo sapiens GN KAT6B PE 1 SV 3
blastp_uniprot_sprot sp|Q8BRB7|KAT6B_MOUSE 248 323 + 76 Gaps:1 4.11 1872 33.77 9e-08 Histone acetyltransferase KAT6B OS Mus musculus GN Kat6b PE 2 SV 3
blastp_uniprot_sprot sp|Q8WML3|KAT6B_MACFA 248 323 + 76 Gaps:1 4.32 1784 33.77 1e-07 Histone acetyltransferase KAT6B OS Macaca fascicularis GN KAT6B PE 2 SV 1
blastp_uniprot_sprot sp|Q9P1Y6|PHRF1_HUMAN 249 294 + 46 Gaps:1 2.73 1649 44.44 2e-06 PHD and RING finger domain-containing protein 1 OS Homo sapiens GN PHRF1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9UIF8|BAZ2B_HUMAN 247 317 + 71 Gaps:1 3.23 2168 38.57 2e-06 Bromodomain adjacent to zinc finger domain protein 2B OS Homo sapiens GN BAZ2B PE 1 SV 3
blastp_uniprot_sprot sp|A6H619|PHRF1_MOUSE 249 294 + 46 Gaps:1 2.68 1682 44.44 2e-06 PHD and RING finger domain-containing protein 1 OS Mus musculus GN Phrf1 PE 2 SV 2
rpsblast_cdd gnl|CDD|201789 564 655 + 92 Gaps:10 68.33 120 29.27 1e-08 pfam01426 BAH BAH domain. This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
rpsblast_cdd gnl|CDD|197726 550 655 + 106 Gaps:12 82.64 121 29.00 4e-07 smart00439 BAH Bromo adjacent homology domain.
rpsblast_cdd gnl|CDD|201356 249 294 + 46 Gaps:3 92.16 51 40.43 6e-07 pfam00628 PHD PHD-finger. PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3.
rpsblast_kog gnl|CDD|36458 240 301 + 62 Gaps:2 19.05 336 34.38 2e-07 KOG1244 KOG1244 KOG1244 Predicted transcription factor Requiem/NEURO-D4 [Transcription].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 240 304 65 SSF57903 none none IPR011011
ProSiteProfiles 246 297 52 PS50016 none Zinc finger PHD-type profile. IPR019787
Pfam 564 655 92 PF01426 none BAH domain IPR001025
ProSitePatterns 249 294 46 PS01359 none Zinc finger PHD-type signature. IPR019786
Gene3D 240 299 60 G3DSA:3.30.40.10 none none IPR013083
PANTHER 248 373 126 PTHR22884:SF278 none none none
ProSiteProfiles 538 667 130 PS51038 none BAH domain profile. IPR001025
SMART 248 295 48 SM00249 none PHD zinc finger IPR001965
PANTHER 248 373 126 PTHR22884 none none none
Pfam 249 295 47 PF00628 none PHD-finger IPR019787

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting