Protein : Qrob_P0391590.2 Q. robur
Protein Identifier  ? Qrob_P0391590.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PTHR23132 - D-ALANINE--D-ALANINE LIGASE Gene Prediction Quality  validated
Protein length 

Sequence

Length: 942  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0008716 D-alanine-D-alanine ligase activity Catalysis of the reaction: 2 D-alanine + ATP = D-alanyl-D-alanine + ADP + 2 H(+) + phosphate.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_021565 3 940 + 938 Gaps:45 95.09 958 76.73 0.0 D-alanine--D-alanine ligase family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa022398mg 50 940 + 891 Gaps:42 94.81 906 79.39 0.0 hypothetical protein
blastp_kegg lcl|pmum:103342923 3 940 + 938 Gaps:52 95.03 945 77.17 0.0 uncharacterized LOC103342923
blastp_kegg lcl|fve:101303146 3 940 + 938 Gaps:45 94.78 957 76.63 0.0 uncharacterized protein LOC101303146
blastp_kegg lcl|pop:POPTR_0006s10670g 1 940 + 940 Gaps:51 95.14 947 77.14 0.0 POPTRDRAFT_560967 hypothetical protein
blastp_kegg lcl|cit:102620172 39 940 + 902 Gaps:29 96.15 908 77.78 0.0 uncharacterized LOC102620172
blastp_kegg lcl|vvi:100265424 36 940 + 905 Gaps:30 92.12 952 77.77 0.0 uncharacterized LOC100265424
blastp_kegg lcl|rcu:RCOM_0157020 3 940 + 938 Gaps:45 90.30 1000 76.30 0.0 D-alanine-D-alanine ligase putative (EC:6.3.2.4)
blastp_kegg lcl|mdm:103450716 3 940 + 938 Gaps:60 94.60 945 75.95 0.0 uncharacterized LOC103450716
blastp_kegg lcl|mtr:MTR_7g071990 52 940 + 889 Gaps:26 90.37 955 76.36 0.0 D-alanine--D-alanine ligase
blastp_pdb 3i12_D 85 491 + 407 Gaps:85 96.15 364 31.14 2e-18 mol:protein length:364 D-alanine-D-alanine ligase A
blastp_pdb 3i12_C 85 491 + 407 Gaps:85 96.15 364 31.14 2e-18 mol:protein length:364 D-alanine-D-alanine ligase A
blastp_pdb 3i12_B 85 491 + 407 Gaps:85 96.15 364 31.14 2e-18 mol:protein length:364 D-alanine-D-alanine ligase A
blastp_pdb 3i12_A 85 491 + 407 Gaps:85 96.15 364 31.14 2e-18 mol:protein length:364 D-alanine-D-alanine ligase A
blastp_pdb 3q1k_D 85 491 + 407 Gaps:85 95.37 367 31.14 2e-18 mol:protein length:367 D-alanine--D-alanine ligase A
blastp_pdb 3q1k_C 85 491 + 407 Gaps:85 95.37 367 31.14 2e-18 mol:protein length:367 D-alanine--D-alanine ligase A
blastp_pdb 3q1k_B 85 491 + 407 Gaps:85 95.37 367 31.14 2e-18 mol:protein length:367 D-alanine--D-alanine ligase A
blastp_pdb 3q1k_A 85 491 + 407 Gaps:85 95.37 367 31.14 2e-18 mol:protein length:367 D-alanine--D-alanine ligase A
blastp_pdb 3k3p_B 89 782 + 694 Gaps:91 87.21 383 34.13 1e-16 mol:protein length:383 D-alanine--D-alanine ligase
blastp_pdb 3k3p_A 89 782 + 694 Gaps:91 87.21 383 34.13 1e-16 mol:protein length:383 D-alanine--D-alanine ligase
blastp_uniprot_sprot sp|Q88EV6|DDLA_PSEPK 87 775 + 689 Gaps:103 95.17 352 34.93 8e-22 D-alanine--D-alanine ligase A OS Pseudomonas putida (strain KT2440) GN ddlA PE 3 SV 1
blastp_uniprot_sprot sp|Q7NV72|DDLA_CHRVO 85 485 + 401 Gaps:75 93.99 366 29.94 6e-21 D-alanine--D-alanine ligase A OS Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN ddlA PE 3 SV 1
blastp_uniprot_sprot sp|A6W7R2|DDL_KINRD 86 494 + 409 Gaps:81 97.34 376 30.87 1e-20 D-alanine--D-alanine ligase OS Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|Q6MQ94|DDL_BDEBA 87 492 + 406 Gaps:95 95.07 365 29.39 1e-20 D-alanine--D-alanine ligase OS Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|A1R7J5|DDL_ARTAT 86 495 + 410 Gaps:74 96.30 378 29.40 1e-20 D-alanine--D-alanine ligase OS Arthrobacter aurescens (strain TC1) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|B4S8W3|DDL_PROA2 86 477 + 392 Gaps:81 94.72 360 30.50 3e-20 D-alanine--D-alanine ligase OS Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|A0QJB2|DDL_MYCA1 85 491 + 407 Gaps:81 97.02 369 32.68 5e-20 D-alanine--D-alanine ligase OS Mycobacterium avium (strain 104) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|Q73VJ4|DDL_MYCPA 85 491 + 407 Gaps:81 97.02 369 32.68 6e-20 D-alanine--D-alanine ligase OS Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|Q9CBS0|DDL_MYCLE 85 811 + 727 Gaps:163 94.27 384 42.82 1e-19 D-alanine--D-alanine ligase OS Mycobacterium leprae (strain TN) GN ddl PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZGN0|DDL_MYCSM 86 785 + 700 Gaps:117 96.78 373 34.90 2e-19 D-alanine--D-alanine ligase OS Mycobacterium smegmatis GN ddl PE 3 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 83 260 178 PTHR23132:SF5 none none none
SUPERFAMILY 85 211 127 SSF52440 none none IPR016185
SUPERFAMILY 285 492 208 SSF56059 none none none
Gene3D 332 494 163 G3DSA:3.30.470.20 none none IPR013816
SUPERFAMILY 759 940 182 SSF56059 none none none
SUPERFAMILY 656 708 53 SSF52440 none none IPR016185
SUPERFAMILY 526 602 77 SSF52440 none none IPR016185
Pfam 277 423 147 PF07478 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" D-ala D-ala ligase C-terminus IPR011095
PANTHER 83 260 178 PTHR23132 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219";signature_desc=D-ALANINE--D-ALANINE LIGASE none IPR005905
ProSitePatterns 676 687 12 PS00843 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" D-alanine--D-alanine ligase signature 1. IPR000291
ProSiteProfiles 245 486 242 PS50975 none ATP-grasp fold profile. IPR011761
Gene3D 621 698 78 G3DSA:3.40.50.20 none none IPR016185
Gene3D 524 565 42 G3DSA:3.40.50.20 none none IPR016185
Gene3D 85 201 117 G3DSA:3.40.50.20 none none IPR016185
PANTHER 287 412 126 PTHR23132:SF5 none none none
Gene3D 283 326 44 G3DSA:3.30.1490.20 none none IPR013815
PANTHER 920 940 21 PTHR23132:SF5 none none none
PANTHER 920 940 21 PTHR23132 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219";signature_desc=D-ALANINE--D-ALANINE LIGASE none IPR005905
Pfam 526 699 174 PF01820 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" D-ala D-ala ligase N-terminus IPR011127
Pfam 86 201 116 PF01820 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" D-ala D-ala ligase N-terminus IPR011127
PANTHER 287 412 126 PTHR23132 "KEGG:00473+6.3.2.4","KEGG:00550+6.3.2.4","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219";signature_desc=D-ALANINE--D-ALANINE LIGASE none IPR005905
Gene3D 850 940 91 G3DSA:3.30.470.20 none none IPR013816
Gene3D 700 725 26 G3DSA:3.30.470.20 none none IPR013816

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting