Protein : Qrob_P0389930.2 Q. robur
Protein Identifier  ? Qrob_P0389930.2 Organism . Name  Quercus robur
Score  89.0 Score Type  egn
Protein Description  (M=23) K14709 - solute carrier family 39 (zinc transporter), member 1/2/3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 285  
Kegg Orthology  K14709
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0030001 metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0046873 metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other.
GO:0005385 zinc ion transmembrane transporter activity Enables the transfer of zinc (Zn) ions from one side of a membrane to the other.
GO:0071577 zinc II ion transmembrane transport A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10012062mg 1 255 + 255 Gaps:9 98.08 261 76.17 6e-132 hypothetical protein
blastp_kegg lcl|cit:102627766 7 253 + 247 Gaps:9 69.86 355 77.42 1e-129 zinc transporter 8-like
blastp_kegg lcl|pvu:PHAVU_006G001000g 11 273 + 263 Gaps:14 70.34 354 71.89 6e-123 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1247260 19 253 + 235 Gaps:10 67.32 355 74.90 4e-120 zinc/iron transporter putative (EC:1.3.1.74)
blastp_kegg lcl|rcu:RCOM_0122460 8 253 + 246 Gaps:6 69.08 359 69.35 1e-118 zinc/iron transporter putative (EC:1.3.1.74)
blastp_kegg lcl|sot:102600170 1 253 + 253 Gaps:11 70.55 343 70.66 5e-117 zinc transporter 5-like
blastp_kegg lcl|tcc:TCM_002136 5 253 + 249 Gaps:2 70.14 355 77.91 7e-117 Zinc transporter 5 precursor
blastp_kegg lcl|vvi:100262239 1 253 + 253 Gaps:9 70.72 345 73.36 2e-116 zinc transporter 1-like
blastp_kegg lcl|cic:CICLE_v10011940mg 5 253 + 249 Gaps:9 64.43 388 76.00 1e-115 hypothetical protein
blastp_kegg lcl|fve:101308782 8 263 + 256 Gaps:4 71.95 353 72.44 1e-115 zinc transporter 1-like
blastp_uniprot_sprot sp|O81123|ZIP1_ARATH 13 270 + 258 Gaps:16 71.55 355 58.66 7e-95 Zinc transporter 1 OS Arabidopsis thaliana GN ZIP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6L8G0|ZIP5_ORYSJ 7 253 + 247 Gaps:5 68.56 353 54.55 6e-84 Zinc transporter 5 OS Oryza sativa subsp. japonica GN ZIP5 PE 2 SV 1
blastp_uniprot_sprot sp|O23039|ZIP5_ARATH 26 253 + 228 Gaps:9 63.61 360 57.64 4e-80 Zinc transporter 5 OS Arabidopsis thaliana GN ZIP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FIS2|ZIP12_ARATH 1 253 + 253 Gaps:19 71.55 355 51.97 1e-72 Probable zinc transporter 12 OS Arabidopsis thaliana GN ZIP12 PE 3 SV 1
blastp_uniprot_sprot sp|Q8W245|ZIP10_ARATH 25 253 + 229 Gaps:2 63.46 364 50.65 5e-72 Probable zinc transporter 10 OS Arabidopsis thaliana GN ZIP10 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XLD4|ZIP3_ORYSJ 8 253 + 246 Gaps:12 70.33 364 51.17 7e-72 Zinc transporter 3 OS Oryza sativa subsp. japonica GN ZIP3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SLG3|ZIP3_ARATH 25 253 + 229 Gaps:25 60.18 339 59.80 1e-70 Zinc transporter 3 OS Arabidopsis thaliana GN ZIP3 PE 2 SV 1
blastp_uniprot_sprot sp|Q75HB1|IRT1_ORYSJ 19 278 + 260 Gaps:15 66.58 374 49.40 1e-69 Fe(2+) transport protein 1 OS Oryza sativa subsp. japonica GN IRT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6L8G1|IRT2_ORYSJ 33 253 + 221 Gaps:17 61.08 370 50.44 3e-69 Fe(2+) transport protein 2 OS Oryza sativa subsp. japonica GN IRT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DHE3|ZIP9_ORYSJ 13 253 + 241 Gaps:19 69.61 362 51.59 4e-66 Zinc transporter 9 OS Oryza sativa subsp. japonica GN ZIP9 PE 3 SV 3
rpsblast_cdd gnl|CDD|162055 26 253 + 228 Gaps:5 68.83 324 56.50 9e-81 TIGR00820 zip ZIP zinc/iron transport family. The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5)Members of the ZIP family consist of proteins with eight putative transmembrane spanners. They are derived from animals plants and yeast. Theycomprise a diverse family with several paralogues in any one organism (e.g. at least five in Caenorabditis elegans at least five in Arabidopsis thaliana and two inSaccharomyces cervisiae. The two S. cerevisiae proteins Zrt1 and Zrt2 both probably transport Zn2+ with high specificity but Zrt1 transports Zn2+ with ten-fold higher affinitythan Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+ and at least one transports a range of metal ions. The energy source fortransport has not been characterized but these systems probably function as secondary carriers.
rpsblast_cdd gnl|CDD|177818 7 253 + 247 Gaps:28 69.73 337 49.79 1e-57 PLN02159 PLN02159 Fe(2+) transport protein.
rpsblast_cdd gnl|CDD|202272 41 253 + 213 Gaps:8 69.75 314 32.42 7e-37 pfam02535 Zip ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product although this protein in not found within this family.
rpsblast_kog gnl|CDD|36771 27 253 + 227 Gaps:2 69.42 327 40.97 3e-57 KOG1558 KOG1558 KOG1558 Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 42 253 212 PF02535 none ZIP Zinc transporter IPR003689
Phobius 66 76 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 77 98 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 118 139 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 43 65 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 140 284 145 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 28 257 230 TIGR00820 none zip: ZIP zinc/iron transport family IPR004698
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 24 253 230 PTHR11040 none none none
Phobius 99 117 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 19 24 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 24 253 230 PTHR11040:SF35 none none none
Phobius 25 42 18 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

7 Localization

Analysis Start End Length
TMHMM 119 141 22
TMHMM 77 99 22
TMHMM 46 65 19
SignalP_GRAM_POSITIVE 1 24 23
TMHMM 7 24 17
SignalP_GRAM_NEGATIVE 1 24 23
SignalP_EUK 1 24 23

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting