Protein : Qrob_P0386950.2 Q. robur

Protein Identifier  ? Qrob_P0386950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11680:SF1 - SERINE HYDROXYMETHYLTRANSFERASE Code Enzyme  EC:2.1.2.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 489  
Kegg Orthology  K00600

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0004372 glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
GO:0006544 glycine metabolic process The chemical reactions and pathways involving glycine, aminoethanoic acid.
GO:0006563 L-serine metabolic process The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100243424 1 488 + 488 Gaps:30 100.00 518 86.68 0.0 serine hydroxymethyltransferase mitochondrial-like
blastp_kegg lcl|pop:POPTR_0010s26130g 1 488 + 488 Gaps:30 99.62 520 86.87 0.0 POPTRDRAFT_833897 Serine hydroxymethyltransferase family protein
blastp_kegg lcl|pper:PRUPE_ppa004306mg 1 488 + 488 Gaps:29 100.00 517 86.85 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_000927 1 488 + 488 Gaps:29 100.00 517 86.07 0.0 Serine transhydroxymethyltransferase 1 isoform 1
blastp_kegg lcl|cic:CICLE_v10025372mg 1 488 + 488 Gaps:29 100.00 517 85.88 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s00350g 1 488 + 488 Gaps:30 99.62 520 86.29 0.0 POPTRDRAFT_421205 Serine hydroxymethyltransferase family protein
blastp_kegg lcl|pxb:103960588 1 488 + 488 Gaps:27 100.00 515 86.21 0.0 serine hydroxymethyltransferase mitochondrial
blastp_kegg lcl|pxb:103954691 1 488 + 488 Gaps:27 100.00 515 86.21 0.0 serine hydroxymethyltransferase mitochondrial
blastp_kegg lcl|rcu:RCOM_0230740 1 488 + 488 Gaps:31 100.00 515 86.41 0.0 serine hydroxymethyltransferase putative (EC:2.1.2.1)
blastp_kegg lcl|cit:102622701 3 488 + 486 Gaps:29 100.00 515 85.63 0.0 serine hydroxymethyltransferase mitochondrial-like
blastp_pdb 3ou5_A 38 481 + 444 Gaps:5 90.82 490 61.80 0.0 mol:protein length:490 Serine hydroxymethyltransferase mitochondria
blastp_pdb 1bj4_A 40 479 + 440 Gaps:3 93.83 470 60.54 0.0 mol:protein length:470 PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE)
blastp_pdb 1ls3_D 40 479 + 440 Gaps:4 91.51 483 60.41 0.0 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_C 40 479 + 440 Gaps:4 91.51 483 60.41 0.0 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_B 40 479 + 440 Gaps:4 91.51 483 60.41 0.0 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_A 40 479 + 440 Gaps:4 91.51 483 60.41 0.0 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1cj0_B 40 479 + 440 Gaps:4 94.04 470 60.41 0.0 mol:protein length:470 PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE)
blastp_pdb 1cj0_A 40 479 + 440 Gaps:4 94.04 470 60.41 0.0 mol:protein length:470 PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE)
blastp_pdb 1rvy_B 40 479 + 440 Gaps:4 91.51 483 60.18 0.0 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_pdb 1rvy_A 40 479 + 440 Gaps:4 91.51 483 60.18 0.0 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_uniprot_sprot sp|P50433|GLYM_SOLTU 1 488 + 488 Gaps:30 100.00 518 83.78 0.0 Serine hydroxymethyltransferase mitochondrial OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|P34899|GLYM_PEA 1 486 + 486 Gaps:30 99.61 518 83.53 0.0 Serine hydroxymethyltransferase mitochondrial OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|P49357|GLYM1_FLAPR 1 488 + 488 Gaps:29 100.00 517 83.17 0.0 Serine hydroxymethyltransferase 1 mitochondrial OS Flaveria pringlei PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZJ5|GLYM1_ARATH 1 488 + 488 Gaps:31 100.00 517 82.79 0.0 Serine hydroxymethyltransferase 1 mitochondrial OS Arabidopsis thaliana GN SHM1 PE 1 SV 1
blastp_uniprot_sprot sp|P49358|GLYM2_FLAPR 1 488 + 488 Gaps:29 100.00 517 83.56 0.0 Serine hydroxymethyltransferase 2 mitochondrial OS Flaveria pringlei PE 2 SV 1
blastp_uniprot_sprot sp|Q94C74|GLYM2_ARATH 3 488 + 486 Gaps:31 100.00 517 80.08 0.0 Serine hydroxymethyltransferase 2 mitochondrial OS Arabidopsis thaliana GN SHM2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7S5N8|GLYM_NEUCR 38 475 + 438 Gaps:18 83.52 546 63.16 0.0 Putative serine hydroxymethyltransferase mitochondrial OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN cbs-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q3SZ20|GLYM_BOVIN 38 480 + 443 Gaps:5 88.10 504 62.16 0.0 Serine hydroxymethyltransferase mitochondrial OS Bos taurus GN SHMT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q94JQ3|GLYP3_ARATH 38 478 + 441 Gaps:11 82.42 529 63.99 0.0 Serine hydroxymethyltransferase 3 chloroplastic OS Arabidopsis thaliana GN SHM3 PE 1 SV 2
blastp_uniprot_sprot sp|Q10104|GLYM_SCHPO 38 474 + 437 Gaps:4 90.37 488 64.17 0.0 Serine hydroxymethyltransferase mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN shm2 PE 3 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 39 424 386 PF00464 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288" Serine hydroxymethyltransferase IPR001085
SUPERFAMILY 38 479 442 SSF53383 none none IPR015424
PANTHER 40 488 449 PTHR11680 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288";signature_desc=SERINE HYDROXYMETHYLTRANSFERASE none IPR001085
PIRSF 30 483 454 PIRSF000412 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288" none IPR001085
ProSitePatterns 250 266 17 PS00096 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288" Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. IPR019798
Gene3D 326 480 155 G3DSA:3.90.1150.10 none none IPR015422
PANTHER 40 488 449 PTHR11680:SF1 none none none
Gene3D 56 325 270 G3DSA:3.40.640.10 none none IPR015421

0 Localization

0 Qtllist

0 Targeting