Protein : Qrob_P0375920.2 Q. robur
Protein Identifier  ? Qrob_P0375920.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K06674 - structural maintenance of chromosome 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 571  
Kegg Orthology  K06674
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0051276 chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
GO:0007076 mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
GO:0000796 condensin complex A multisubunit protein complex that plays a central role in chromosome condensation.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102609815 1 566 + 566 Gaps:54 52.72 1176 75.65 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|cic:CICLE_v10004183mg 1 566 + 566 Gaps:54 52.72 1176 75.32 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333363 1 566 + 566 Gaps:54 52.77 1175 73.55 0.0 structural maintenance of chromosomes protein 2-1
blastp_kegg lcl|rcu:RCOM_1500520 1 566 + 566 Gaps:54 52.72 1176 72.90 0.0 Structural maintenance of chromosome putative
blastp_kegg lcl|pop:POPTR_0001s00710g 1 566 + 566 Gaps:54 52.72 1176 73.87 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000445mg 1 566 + 566 Gaps:54 52.77 1175 73.23 0.0 hypothetical protein
blastp_kegg lcl|cam:101501239 1 566 + 566 Gaps:54 52.77 1175 73.71 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|tcc:TCM_014915 1 566 + 566 Gaps:54 52.72 1176 72.74 0.0 Structural maintenance of chromosomes (SMC) family protein isoform 1
blastp_kegg lcl|fve:101301143 1 566 + 566 Gaps:54 52.77 1175 72.10 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|pop:POPTR_0003s10790g 1 566 + 566 Gaps:54 52.72 1176 73.55 0.0 POPTRDRAFT_757320 TITAN3 family protein
blastp_pdb 3kta_C 2 183 + 182 Gaps:9 98.35 182 35.20 6e-24 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 3kta_A 2 183 + 182 Gaps:9 98.35 182 35.20 6e-24 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 1xex_A 2 183 + 182 Gaps:9 98.35 182 35.20 6e-24 mol:protein length:182 SMC protein
blastp_pdb 1xew_X 2 183 + 182 Gaps:9 98.35 182 35.20 6e-24 mol:protein length:182 SMC protein
blastp_pdb 3l51_A 456 561 + 106 Gaps:7 61.49 161 48.48 2e-18 mol:protein length:161 Structural maintenance of chromosomes protein
blastp_pdb 1e69_F 1 161 + 161 Gaps:19 46.58 322 34.00 1e-12 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_E 1 161 + 161 Gaps:19 46.58 322 34.00 1e-12 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_D 1 161 + 161 Gaps:19 46.58 322 34.00 1e-12 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_C 1 161 + 161 Gaps:19 46.58 322 34.00 1e-12 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_B 1 161 + 161 Gaps:19 46.58 322 34.00 1e-12 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q9C5Y4|SMC21_ARATH 1 566 + 566 Gaps:54 52.77 1175 68.71 0.0 Structural maintenance of chromosomes protein 2-1 OS Arabidopsis thaliana GN SMC2-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SN90|SMC22_ARATH 1 566 + 566 Gaps:57 52.69 1171 67.10 0.0 Structural maintenance of chromosomes protein 2-2 OS Arabidopsis thaliana GN SMC2-2 PE 2 SV 1
blastp_uniprot_sprot sp|P50533|SMC2_XENLA 1 566 + 566 Gaps:57 51.79 1203 44.30 3e-153 Structural maintenance of chromosomes protein 2 OS Xenopus laevis GN smc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q54PK4|SMC2_DICDI 1 566 + 566 Gaps:64 52.53 1184 42.60 1e-147 Structural maintenance of chromosomes protein 2 OS Dictyostelium discoideum GN smc2 PE 3 SV 1
blastp_uniprot_sprot sp|O95347|SMC2_HUMAN 1 566 + 566 Gaps:56 51.96 1197 43.57 7e-147 Structural maintenance of chromosomes protein 2 OS Homo sapiens GN SMC2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8CG48|SMC2_MOUSE 1 566 + 566 Gaps:56 52.23 1191 43.25 1e-146 Structural maintenance of chromosomes protein 2 OS Mus musculus GN Smc2 PE 1 SV 2
blastp_uniprot_sprot sp|Q90988|SMC2_CHICK 1 566 + 566 Gaps:70 52.31 1189 40.03 2e-130 Structural maintenance of chromosomes protein 2 OS Gallus gallus GN SMC2 PE 2 SV 1
blastp_uniprot_sprot sp|P41003|SMC2_SCHPO 1 566 + 566 Gaps:59 53.16 1172 39.17 2e-124 Structural maintenance of chromosomes protein 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cut14 PE 1 SV 2
blastp_uniprot_sprot sp|P38989|SMC2_YEAST 1 566 + 566 Gaps:86 53.33 1170 35.74 4e-107 Structural maintenance of chromosomes protein 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8IED2|SMC2_PLAF7 1 566 + 566 Gaps:95 52.30 1218 34.22 4e-87 Structural maintenance of chromosomes protein 2 OS Plasmodium falciparum (isolate 3D7) GN MAL13P1.96 PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 561 551 PTHR18937:SF9 none none IPR027120
PANTHER 11 561 551 PTHR18937 none none none
SUPERFAMILY 239 327 89 SSF52540 none none IPR027417
SUPERFAMILY 1 212 212 SSF52540 none none IPR027417
Coils 324 359 36 Coil none none none
Gene3D 400 456 57 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1 167 167 G3DSA:3.40.50.300 none none IPR027417
Pfam 2 248 247 PF02463 none RecF/RecN/SMC N terminal domain IPR003395
Pfam 487 564 78 PF06470 none SMC proteins Flexible Hinge Domain IPR010935
Coils 452 473 22 Coil none none none
Coils 392 434 43 Coil none none none
SUPERFAMILY 415 566 152 SSF75553 none none IPR010935
Coils 260 288 29 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting