Protein : Qrob_P0375870.2 Q. robur
Protein Identifier  ? Qrob_P0375870.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=2) K06674 - structural maintenance of chromosome 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1204  
Kegg Orthology  K06674
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0051276 chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
GO:0007076 mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
GO:0000796 condensin complex A multisubunit protein complex that plays a central role in chromosome condensation.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103333363 1 1203 + 1203 Gaps:30 99.83 1175 85.51 0.0 structural maintenance of chromosomes protein 2-1
blastp_kegg lcl|pper:PRUPE_ppa000445mg 1 1203 + 1203 Gaps:30 99.83 1175 85.42 0.0 hypothetical protein
blastp_kegg lcl|cit:102609815 1 1203 + 1203 Gaps:30 99.74 1176 86.45 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|pop:POPTR_0001s00710g 1 1203 + 1203 Gaps:30 99.74 1176 86.10 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004183mg 1 1203 + 1203 Gaps:30 99.74 1176 86.45 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1500520 1 1203 + 1203 Gaps:30 99.74 1176 85.42 0.0 Structural maintenance of chromosome putative
blastp_kegg lcl|pxb:103959815 1 1203 + 1203 Gaps:30 99.83 1175 85.17 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|pop:POPTR_0003s10790g 1 1203 + 1203 Gaps:30 99.74 1176 85.93 0.0 POPTRDRAFT_757320 TITAN3 family protein
blastp_kegg lcl|pxb:103961946 1 1203 + 1203 Gaps:30 99.83 1175 85.17 0.0 structural maintenance of chromosomes protein 2-1-like
blastp_kegg lcl|mdm:103439618 1 1203 + 1203 Gaps:30 99.83 1175 85.08 0.0 structural maintenance of chromosomes protein 2-1
blastp_pdb 3l51_A 507 694 + 188 Gaps:27 100.00 161 57.14 1e-51 mol:protein length:161 Structural maintenance of chromosomes protein
blastp_pdb 3kta_C 2 183 + 182 Gaps:9 98.35 182 36.87 6e-27 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 3kta_A 2 183 + 182 Gaps:9 98.35 182 36.87 6e-27 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 1xex_A 2 183 + 182 Gaps:9 98.35 182 36.87 6e-27 mol:protein length:182 SMC protein
blastp_pdb 1xew_X 2 183 + 182 Gaps:9 98.35 182 36.87 6e-27 mol:protein length:182 SMC protein
blastp_pdb 3kta_D 1050 1196 + 147 Gaps:3 85.55 173 35.81 6e-21 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 3kta_B 1050 1196 + 147 Gaps:3 85.55 173 35.81 6e-21 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 1xew_Y 1051 1196 + 146 Gaps:3 85.47 172 36.05 1e-20 mol:protein length:172 SMC protein
blastp_pdb 1xex_B 1051 1196 + 146 Gaps:3 85.47 172 35.37 3e-20 mol:protein length:172 SMC protein
blastp_pdb 1e69_F 1 1196 + 1196 Gaps:21 89.44 322 35.42 5e-16 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q9C5Y4|SMC21_ARATH 1 1200 + 1200 Gaps:30 99.57 1175 78.72 0.0 Structural maintenance of chromosomes protein 2-1 OS Arabidopsis thaliana GN SMC2-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SN90|SMC22_ARATH 1 1201 + 1201 Gaps:33 99.74 1171 77.14 0.0 Structural maintenance of chromosomes protein 2-2 OS Arabidopsis thaliana GN SMC2-2 PE 2 SV 1
blastp_uniprot_sprot sp|P50533|SMC2_XENLA 1 1198 + 1198 Gaps:65 97.34 1203 47.14 0.0 Structural maintenance of chromosomes protein 2 OS Xenopus laevis GN smc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8CG48|SMC2_MOUSE 1 1198 + 1198 Gaps:54 98.24 1191 47.01 0.0 Structural maintenance of chromosomes protein 2 OS Mus musculus GN Smc2 PE 1 SV 2
blastp_uniprot_sprot sp|Q54PK4|SMC2_DICDI 1 1200 + 1200 Gaps:56 98.99 1184 46.84 0.0 Structural maintenance of chromosomes protein 2 OS Dictyostelium discoideum GN smc2 PE 3 SV 1
blastp_uniprot_sprot sp|O95347|SMC2_HUMAN 1 1198 + 1198 Gaps:46 97.74 1197 46.07 0.0 Structural maintenance of chromosomes protein 2 OS Homo sapiens GN SMC2 PE 1 SV 2
blastp_uniprot_sprot sp|Q90988|SMC2_CHICK 1 1198 + 1198 Gaps:46 98.40 1189 43.76 0.0 Structural maintenance of chromosomes protein 2 OS Gallus gallus GN SMC2 PE 2 SV 1
blastp_uniprot_sprot sp|P41003|SMC2_SCHPO 1 1197 + 1197 Gaps:65 99.83 1172 40.34 0.0 Structural maintenance of chromosomes protein 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cut14 PE 1 SV 2
blastp_uniprot_sprot sp|P38989|SMC2_YEAST 1 1196 + 1196 Gaps:75 99.74 1170 37.70 0.0 Structural maintenance of chromosomes protein 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8IED2|SMC2_PLAF7 1 1198 + 1198 Gaps:78 97.37 1218 35.83 0.0 Structural maintenance of chromosomes protein 2 OS Plasmodium falciparum (isolate 3D7) GN MAL13P1.96 PE 3 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 579 1202 624 PTHR18937 none none none
PANTHER 11 547 537 PTHR18937 none none none
Pfam 571 668 98 PF06470 none SMC proteins Flexible Hinge Domain IPR010935
Phobius 1 1119 1119 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 1037 1197 161 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1 167 167 G3DSA:3.40.50.300 none none IPR027417
SMART 521 668 148 SM00968 none SMC proteins Flexible Hinge Domain IPR010935
Coils 178 199 22 Coil none none none
SUPERFAMILY 490 545 56 SSF75553 none none IPR010935
SUPERFAMILY 573 715 143 SSF75553 none none IPR010935
Phobius 1141 1203 63 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 1012 1057 46 Coil none none none
Coils 260 288 29 Coil none none none
Coils 407 449 43 Coil none none none
Coils 483 511 29 Coil none none none
Coils 352 380 29 Coil none none none
Coils 709 730 22 Coil none none none
Coils 812 917 106 Coil none none none
Coils 766 794 29 Coil none none none
PANTHER 579 1202 624 PTHR18937:SF9 none none IPR027120
PANTHER 11 547 537 PTHR18937:SF9 none none IPR027120
Coils 307 349 43 Coil none none none
Phobius 1120 1140 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1 200 200 SSF52540 none none IPR027417
SUPERFAMILY 1088 1187 100 SSF52540 none none IPR027417
Pfam 883 1191 309 PF02463 none RecF/RecN/SMC N terminal domain IPR003395
Pfam 2 428 427 PF02463 none RecF/RecN/SMC N terminal domain IPR003395
Coils 924 959 36 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting