Protein : Qrob_P0375620.2 Q. robur
Protein Identifier  ? Qrob_P0375620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12375:SF18 - PREDICTED PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 283  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0005685 U1 snRNP A ribonucleoprotein complex that contains small nuclear RNA U1.
GO:0006376 mRNA splice site selection Selection of a splice site by components of the assembling spliceosome.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103439630 10 282 + 273 Gaps:1 79.07 344 83.09 1e-136 luc7-like protein 3
blastp_kegg lcl|mdm:103417822 10 282 + 273 none 77.12 354 83.15 3e-135 luc7-like protein 3
blastp_kegg lcl|mdm:103439292 10 282 + 273 none 77.12 354 82.78 1e-133 luc7-like protein 3
blastp_kegg lcl|tcc:TCM_014922 10 277 + 268 Gaps:3 75.50 351 82.64 6e-129 LUC7 N_terminus domain-containing protein isoform 1
blastp_kegg lcl|cam:101500137 10 282 + 273 Gaps:2 78.78 344 77.49 7e-127 luc7-like protein 3-like
blastp_kegg lcl|pxb:103959821 10 282 + 273 Gaps:1 79.07 344 83.09 1e-126 luc7-like protein 3
blastp_kegg lcl|pxb:103961952 10 282 + 273 Gaps:1 79.07 344 83.09 2e-126 luc7-like protein 3
blastp_kegg lcl|pper:PRUPE_ppa007819mg 10 282 + 273 none 77.12 354 84.62 9e-125 hypothetical protein
blastp_kegg lcl|pmum:103333359 10 282 + 273 none 77.12 354 84.62 4e-124 luc7-like protein 3
blastp_kegg lcl|pxb:103932664 10 282 + 273 none 77.12 354 82.78 3e-120 luc7-like protein 3
blastp_uniprot_sprot sp|Q5R8W6|LC7L3_PONAB 11 182 + 172 Gaps:5 39.58 432 36.84 2e-26 Luc7-like protein 3 OS Pongo abelii GN LUC7L3 PE 2 SV 1
blastp_uniprot_sprot sp|O95232|LC7L3_HUMAN 11 182 + 172 Gaps:5 39.58 432 36.84 2e-26 Luc7-like protein 3 OS Homo sapiens GN LUC7L3 PE 1 SV 2
blastp_uniprot_sprot sp|Q3SX41|LC7L3_BOVIN 11 182 + 172 Gaps:5 39.58 432 36.84 2e-26 Luc7-like protein 3 OS Bos taurus GN LUC7L3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5SUF2|LC7L3_MOUSE 11 182 + 172 Gaps:5 39.58 432 36.84 3e-26 Luc7-like protein 3 OS Mus musculus GN Luc7l3 PE 1 SV 1
blastp_uniprot_sprot sp|Q54XQ8|LUC7L_DICDI 11 172 + 162 Gaps:27 48.61 360 31.43 3e-19 Luc7-like protein OS Dictyostelium discoideum GN crop PE 3 SV 1
blastp_uniprot_sprot sp|Q9CYI4|LUC7L_MOUSE 24 167 + 144 Gaps:2 38.27 371 29.58 2e-12 Putative RNA-binding protein Luc7-like 1 OS Mus musculus GN Luc7l PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQ29|LUC7L_HUMAN 24 167 + 144 Gaps:2 38.27 371 29.58 2e-12 Putative RNA-binding protein Luc7-like 1 OS Homo sapiens GN LUC7L PE 1 SV 1
blastp_uniprot_sprot sp|Q7TNC4|LC7L2_MOUSE 24 173 + 150 Gaps:2 37.76 392 29.73 7e-12 Putative RNA-binding protein Luc7-like 2 OS Mus musculus GN Luc7l2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y383|LC7L2_HUMAN 24 173 + 150 Gaps:2 37.76 392 29.73 8e-12 Putative RNA-binding protein Luc7-like 2 OS Homo sapiens GN LUC7L2 PE 1 SV 2
rpsblast_cdd gnl|CDD|112027 10 188 + 179 Gaps:6 71.03 252 34.64 9e-40 pfam03194 LUC7 LUC7 N_terminus. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).
rpsblast_cdd gnl|CDD|183675 170 276 + 107 Gaps:14 22.02 672 59.46 3e-10 PRK12678 PRK12678 transcription termination factor Rho Provisional.
rpsblast_cdd gnl|CDD|162459 166 279 + 114 Gaps:15 21.81 509 57.66 1e-09 TIGR01642 U2AF_lg U2 snRNP auxilliary factor large subunit splicing factor. These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants metazoa and fungi.
rpsblast_kog gnl|CDD|36015 10 272 + 263 Gaps:13 79.00 319 39.68 6e-32 KOG0796 KOG0796 KOG0796 Spliceosome subunit [RNA processing and modification].
rpsblast_kog gnl|CDD|35369 177 281 + 105 Gaps:8 20.58 549 28.32 3e-07 KOG0147 KOG0147 KOG0147 Transcriptional coactivator CAPER (RRM superfamily) [Transcription].
rpsblast_kog gnl|CDD|35342 180 282 + 103 Gaps:1 20.40 500 26.47 7e-07 KOG0120 KOG0120 KOG0120 Splicing factor U2AF large subunit (RRM superfamily) [RNA processing and modification].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 96 117 22 Coil none none none
Coils 63 91 29 Coil none none none
Pfam 10 194 185 PF03194 none LUC7 N_terminus IPR004882
Coils 165 207 43 Coil none none none
PANTHER 10 280 271 PTHR12375 none none IPR004882
PANTHER 10 280 271 PTHR12375:SF18 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting