Protein : Qrob_P0372160.2 Q. robur

Protein Identifier  ? Qrob_P0372160.2 Organism . Name  Quercus robur
Protein Description  (M=16) K15397 - 3-ketoacyl-CoA synthase [EC:2.3.1.199] Alias (in v1)  Qrob_P0315550.1
Code Enzyme  EC:2.3.1.199 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 525  
Kegg Orthology  K15397

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0006633 fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
GO:0008610 lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103320850 1 523 + 523 Gaps:5 100.00 518 88.03 0.0 3-ketoacyl-CoA synthase 4
blastp_kegg lcl|pper:PRUPE_ppa004284mg 1 523 + 523 Gaps:5 100.00 518 88.03 0.0 hypothetical protein
blastp_kegg lcl|pxb:103954810 1 523 + 523 Gaps:7 100.00 516 88.18 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|sly:101263606 1 523 + 523 Gaps:6 100.00 517 86.46 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|mdm:103450478 1 523 + 523 Gaps:7 100.00 516 87.98 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|cmo:103487967 14 523 + 510 none 99.22 514 87.45 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|pxb:103955399 1 523 + 523 Gaps:7 100.00 516 87.21 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|mdm:103420939 1 523 + 523 Gaps:7 100.00 516 87.40 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|csv:101217470 1 523 + 523 Gaps:9 100.00 514 86.96 0.0 3-ketoacyl-CoA synthase 4-like
blastp_kegg lcl|sot:102593540 13 523 + 511 Gaps:7 99.81 519 84.94 0.0 3-ketoacyl-CoA synthase 4-like
blastp_pdb 1u0m_B 192 497 + 306 Gaps:73 71.47 382 26.37 3e-12 mol:protein length:382 putative polyketide synthase
blastp_pdb 1u0m_A 192 497 + 306 Gaps:73 71.47 382 26.37 3e-12 mol:protein length:382 putative polyketide synthase
blastp_pdb 3ale_D 214 502 + 289 Gaps:36 64.66 416 25.28 3e-10 mol:protein length:416 Os07g0271500 protein
blastp_pdb 3ale_C 214 502 + 289 Gaps:36 64.66 416 25.28 3e-10 mol:protein length:416 Os07g0271500 protein
blastp_pdb 3ale_B 214 502 + 289 Gaps:36 64.66 416 25.28 3e-10 mol:protein length:416 Os07g0271500 protein
blastp_pdb 3ale_A 214 502 + 289 Gaps:36 64.66 416 25.28 3e-10 mol:protein length:416 Os07g0271500 protein
blastp_pdb 3oit_B 214 498 + 285 Gaps:36 68.48 387 25.28 8e-10 mol:protein length:387 Os07g0271500 protein
blastp_pdb 3oit_A 214 498 + 285 Gaps:36 68.48 387 25.28 8e-10 mol:protein length:387 Os07g0271500 protein
blastp_pdb 1i86_A 241 488 + 248 Gaps:41 57.84 389 28.00 7e-08 mol:protein length:389 CHALCONE SYNTHASE 2
blastp_pdb 1i88_B 241 488 + 248 Gaps:41 57.84 389 28.00 8e-08 mol:protein length:389 CHALCONE SYNTHASE 2
blastp_uniprot_sprot sp|Q9LN49|KCS4_ARATH 29 523 + 495 Gaps:1 95.74 516 85.63 0.0 3-ketoacyl-CoA synthase 4 OS Arabidopsis thaliana GN KCS4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIX1|KCS9_ARATH 23 520 + 498 Gaps:2 97.66 512 77.00 0.0 3-ketoacyl-CoA synthase 9 OS Arabidopsis thaliana GN KCS9 PE 2 SV 1
blastp_uniprot_sprot sp|O65677|KCS2_ARATH 47 520 + 474 Gaps:6 96.51 487 72.98 0.0 Probable 3-ketoacyl-CoA synthase 2 OS Arabidopsis thaliana GN KCS2 PE 2 SV 1
blastp_uniprot_sprot sp|O48780|KCS11_ARATH 34 520 + 487 Gaps:1 95.87 509 67.21 0.0 3-ketoacyl-CoA synthase 11 OS Arabidopsis thaliana GN KCS11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XF43|KCS6_ARATH 36 519 + 484 none 97.38 497 63.84 0.0 3-ketoacyl-CoA synthase 6 OS Arabidopsis thaliana GN CUT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C6L5|KCS5_ARATH 36 519 + 484 none 98.37 492 63.22 0.0 3-ketoacyl-CoA synthase 5 OS Arabidopsis thaliana GN KCS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5XEP9|KCS17_ARATH 33 519 + 487 Gaps:10 93.75 528 63.64 0.0 3-ketoacyl-CoA synthase 17 OS Arabidopsis thaliana GN KCS17 PE 2 SV 2
blastp_uniprot_sprot sp|Q38860|KCS18_ARATH 40 524 + 485 Gaps:14 97.43 506 64.71 0.0 3-ketoacyl-CoA synthase 18 OS Arabidopsis thaliana GN FAE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SYZ0|KCS16_ARATH 45 520 + 476 Gaps:6 97.77 493 62.24 0.0 3-ketoacyl-CoA synthase 16 OS Arabidopsis thaliana GN KCS16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAM3|KCS1_ARATH 30 522 + 493 Gaps:7 94.70 528 58.80 0.0 3-ketoacyl-CoA synthase 1 OS Arabidopsis thaliana GN KCS1 PE 2 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 328 497 170 SSF53901 none none IPR016039
PANTHER 16 520 505 PTHR31561 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094";signature_desc=FAMILY NOT NAMED none IPR012392
PIRSF 38 524 487 PIRSF036417 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" none IPR012392
Pfam 111 400 290 PF08392 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" FAE1/Type III polyketide synthase-like protein IPR013601
Phobius 52 73 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 111 316 206 G3DSA:3.40.47.10 none none IPR016038
Phobius 1 51 51 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 74 93 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 105 323 219 SSF53901 none none IPR016039
Phobius 94 113 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 114 524 411 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 417 497 81 PF08541 "KEGG:00061+2.3.1.180","MetaCyc:PWY-4381","UniPathway:UPA00094" 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IPR013747
Gene3D 327 500 174 G3DSA:3.40.47.10 none none IPR016038

3 Localization

Analysis Start End Length
TMHMM 50 72 22
TMHMM 92 114 22
TMHMM 13 30 17

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting