Protein : Qrob_P0371780.2 Q. robur
Protein Identifier  ? Qrob_P0371780.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR11785//PTHR11785:SF286 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED (PTHR11785:SF286) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 516  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.
GO:0006865 amino acid transport The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s12910g 6 515 + 510 none 98.46 518 85.69 0.0 POPTRDRAFT_805157 hypothetical protein
blastp_kegg lcl|cit:102610833 6 513 + 508 none 97.50 521 86.22 0.0 amino-acid permease BAT1-like
blastp_kegg lcl|cic:CICLE_v10014915mg 6 513 + 508 none 97.50 521 86.02 0.0 hypothetical protein
blastp_kegg lcl|gmx:100794968 7 513 + 507 none 93.03 545 83.43 0.0 amino-acid permease BAT1 homolog
blastp_kegg lcl|fve:101303611 7 515 + 509 none 99.41 512 86.44 0.0 amino-acid permease BAT1-like
blastp_kegg lcl|gmx:100805385 5 513 + 509 none 97.88 520 82.51 0.0 amino-acid permease BAT1 homolog
blastp_kegg lcl|rcu:RCOM_0577350 6 515 + 510 none 96.59 528 84.71 0.0 GABA-specific permease putative
blastp_kegg lcl|pop:POPTR_0008s12400g 6 513 + 508 Gaps:9 98.42 507 85.77 0.0 POPTRDRAFT_766100 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G032800g 5 513 + 509 none 97.88 520 81.53 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341663 3 514 + 512 none 89.60 702 79.81 0.0 amino-acid permease BAT1
blastp_uniprot_sprot sp|B9EXZ6|BAT1_ORYSJ 14 514 + 501 none 96.35 520 81.84 0.0 Amino-acid permease BAT1 homolog OS Oryza sativa subsp. japonica GN BAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZU50|BAT1_ARATH 12 513 + 502 none 97.29 516 77.09 0.0 Amino-acid permease BAT1 OS Arabidopsis thaliana GN BAT1 PE 2 SV 2
blastp_uniprot_sprot sp|O60113|YG64_SCHPO 18 514 + 497 Gaps:17 89.67 542 33.74 3e-80 Uncharacterized amino-acid permease C15C4.04c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC15C4.04c PE 3 SV 1
blastp_uniprot_sprot sp|O74537|YCQ4_SCHPO 6 513 + 508 Gaps:27 89.23 557 31.99 2e-67 Uncharacterized amino-acid permease C74.04 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC74.04 PE 3 SV 1
blastp_uniprot_sprot sp|Q09887|YC9D_SCHPO 3 509 + 507 Gaps:33 91.91 544 31.80 5e-66 Uncharacterized amino-acid permease C584.13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC584.13 PE 3 SV 1
blastp_uniprot_sprot sp|Q9US40|YFZ1_SCHPO 18 509 + 492 Gaps:24 84.66 567 32.29 7e-62 Uncharacterized amino-acid permease C1039.01 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC1039.01 PE 3 SV 1
blastp_uniprot_sprot sp|O59942|AAP2_NEUCR 15 512 + 498 Gaps:44 89.46 541 29.75 8e-57 Amino-acid permease 2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN aap-2 PE 2 SV 2
blastp_uniprot_sprot sp|O74248|GPT1_CANAX 12 513 + 502 Gaps:29 89.87 553 28.17 4e-55 Putative polyamine transporter OS Candida albicans GN GPT1 PE 3 SV 1
blastp_uniprot_sprot sp|P32837|UGA4_YEAST 19 513 + 495 Gaps:23 85.46 571 31.15 2e-54 GABA-specific permease OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UGA4 PE 1 SV 1
blastp_uniprot_sprot sp|O59813|YCT3_SCHPO 10 505 + 496 Gaps:15 88.99 554 26.77 9e-46 Uncharacterized amino-acid permease C794.03 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC794.03 PE 2 SV 1
rpsblast_cdd gnl|CDD|162100 19 509 + 491 Gaps:13 100.00 482 43.57 1e-150 TIGR00907 2A0304 amino acid permease (GABA permease).
rpsblast_cdd gnl|CDD|205698 38 488 + 451 Gaps:31 98.82 425 23.33 6e-40 pfam13520 AA_permease_2 Amino acid permease.
rpsblast_cdd gnl|CDD|132469 19 470 + 452 Gaps:48 93.05 475 27.60 7e-37 TIGR03428 ureacarb_perm permease urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase but other uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
rpsblast_cdd gnl|CDD|30877 26 503 + 478 Gaps:29 96.35 466 21.16 1e-20 COG0531 PotE Amino acid transporters [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|201154 58 499 + 442 Gaps:37 92.39 473 19.22 3e-18 pfam00324 AA_permease Amino acid permease.
rpsblast_cdd gnl|CDD|31175 49 514 + 466 Gaps:41 83.36 541 19.07 2e-11 COG0833 LysP Amino acid transporters [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|129987 28 425 + 398 Gaps:59 85.08 429 22.19 1e-09 TIGR00909 2A0306 amino acid transporter.
rpsblast_cdd gnl|CDD|31310 57 514 + 458 Gaps:70 93.51 462 20.14 9e-09 COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162101 6 371 + 366 Gaps:35 67.66 501 23.89 9e-07 TIGR00911 2A0308 L-type amino acid transporter.
rpsblast_kog gnl|CDD|36503 9 514 + 506 Gaps:18 90.18 550 43.95 1e-131 KOG1289 KOG1289 KOG1289 Amino acid transporters [Amino acid transport and metabolism].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 445 469 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 19 509 491 TIGR00907 none 2A0304: amino acid permease IPR004756
Phobius 327 348 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 349 385 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 122 126 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 7 514 508 PTHR11785:SF286 none none none
Phobius 386 408 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 148 158 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 434 444 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 32 488 457 PF13520 none Amino acid permease IPR002293
Phobius 1 33 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 98 121 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 470 480 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 87 97 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 209 274 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 184 208 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 501 515 15 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 414 433 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 56 66 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 67 86 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 7 514 508 PTHR11785 none none IPR002293
Phobius 159 178 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 409 413 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 481 500 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 179 183 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 34 55 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 275 297 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 127 147 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 298 326 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 18 509 492 PIRSF006060 none none IPR002293

13 Localization

Analysis Start End Length
TMHMM 386 408 22
TMHMM 98 120 22
TMHMM 275 297 22
TMHMM 193 212 19
TMHMM 479 501 22
TMHMM 32 54 22
TMHMM 412 434 22
TMHMM 330 352 22
TMHMM 61 83 22
TMHMM 447 469 22
TMHMM 164 186 22
TMHMM 127 149 22
TMHMM 232 254 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting