Protein : Qrob_P0371750.2 Q. robur
Protein Identifier  ? Qrob_P0371750.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11785//PTHR11785:SF286 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED (PTHR11785:SF286) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 530  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.
GO:0006865 amino acid transport The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s12910g 6 529 + 524 Gaps:14 98.46 518 86.86 0.0 POPTRDRAFT_805157 hypothetical protein
blastp_kegg lcl|cit:102610833 6 527 + 522 Gaps:14 97.50 521 86.42 0.0 amino-acid permease BAT1-like
blastp_kegg lcl|cic:CICLE_v10014915mg 6 527 + 522 Gaps:14 97.50 521 86.22 0.0 hypothetical protein
blastp_kegg lcl|fve:101303611 7 529 + 523 Gaps:14 99.41 512 86.44 0.0 amino-acid permease BAT1-like
blastp_kegg lcl|gmx:100794968 7 527 + 521 Gaps:14 93.03 545 83.63 0.0 amino-acid permease BAT1 homolog
blastp_kegg lcl|rcu:RCOM_0577350 6 529 + 524 Gaps:14 96.59 528 85.69 0.0 GABA-specific permease putative
blastp_kegg lcl|pop:POPTR_0008s12400g 6 527 + 522 Gaps:23 98.42 507 86.77 0.0 POPTRDRAFT_766100 hypothetical protein
blastp_kegg lcl|gmx:100805385 5 527 + 523 Gaps:14 97.88 520 82.71 0.0 amino-acid permease BAT1 homolog
blastp_kegg lcl|pmum:103341663 5 528 + 524 Gaps:35 92.31 702 78.70 0.0 amino-acid permease BAT1
blastp_kegg lcl|pvu:PHAVU_007G032800g 5 527 + 523 Gaps:14 97.88 520 81.34 0.0 hypothetical protein
blastp_uniprot_sprot sp|B9EXZ6|BAT1_ORYSJ 14 528 + 515 Gaps:14 96.35 520 82.63 0.0 Amino-acid permease BAT1 homolog OS Oryza sativa subsp. japonica GN BAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZU50|BAT1_ARATH 12 527 + 516 Gaps:14 97.29 516 77.49 0.0 Amino-acid permease BAT1 OS Arabidopsis thaliana GN BAT1 PE 2 SV 2
blastp_uniprot_sprot sp|O60113|YG64_SCHPO 9 528 + 520 Gaps:32 91.14 542 34.82 4e-82 Uncharacterized amino-acid permease C15C4.04c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC15C4.04c PE 3 SV 1
blastp_uniprot_sprot sp|O74537|YCQ4_SCHPO 6 527 + 522 Gaps:41 89.23 557 32.60 8e-68 Uncharacterized amino-acid permease C74.04 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC74.04 PE 3 SV 1
blastp_uniprot_sprot sp|Q09887|YC9D_SCHPO 14 523 + 510 Gaps:37 89.89 544 31.49 1e-63 Uncharacterized amino-acid permease C584.13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC584.13 PE 3 SV 1
blastp_uniprot_sprot sp|Q9US40|YFZ1_SCHPO 18 523 + 506 Gaps:38 84.66 567 32.50 2e-59 Uncharacterized amino-acid permease C1039.01 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC1039.01 PE 3 SV 1
blastp_uniprot_sprot sp|O59942|AAP2_NEUCR 15 526 + 512 Gaps:58 89.46 541 30.17 4e-57 Amino-acid permease 2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN aap-2 PE 2 SV 2
blastp_uniprot_sprot sp|O74248|GPT1_CANAX 12 527 + 516 Gaps:43 89.87 553 28.57 2e-56 Putative polyamine transporter OS Candida albicans GN GPT1 PE 3 SV 1
blastp_uniprot_sprot sp|P32837|UGA4_YEAST 19 527 + 509 Gaps:37 85.46 571 31.97 1e-54 GABA-specific permease OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UGA4 PE 1 SV 1
blastp_uniprot_sprot sp|O59813|YCT3_SCHPO 11 513 + 503 Gaps:36 87.55 554 28.87 9e-46 Uncharacterized amino-acid permease C794.03 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC794.03 PE 2 SV 1
rpsblast_cdd gnl|CDD|162100 19 523 + 505 Gaps:27 100.00 482 44.19 1e-150 TIGR00907 2A0304 amino acid permease (GABA permease).
rpsblast_cdd gnl|CDD|205698 52 502 + 451 Gaps:31 98.82 425 23.10 8e-41 pfam13520 AA_permease_2 Amino acid permease.
rpsblast_cdd gnl|CDD|132469 19 484 + 466 Gaps:50 93.05 475 27.60 2e-34 TIGR03428 ureacarb_perm permease urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase but other uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
rpsblast_cdd gnl|CDD|30877 54 517 + 464 Gaps:27 93.78 466 21.05 7e-22 COG0531 PotE Amino acid transporters [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|201154 72 513 + 442 Gaps:37 92.39 473 20.37 7e-20 pfam00324 AA_permease Amino acid permease.
rpsblast_cdd gnl|CDD|31175 71 437 + 367 Gaps:39 63.96 541 21.39 3e-12 COG0833 LysP Amino acid transporters [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|129987 63 439 + 377 Gaps:62 80.42 429 22.03 5e-10 TIGR00909 2A0306 amino acid transporter.
rpsblast_cdd gnl|CDD|31310 71 523 + 453 Gaps:74 93.29 462 20.65 2e-08 COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162101 6 385 + 380 Gaps:49 67.66 501 25.66 2e-08 TIGR00911 2A0308 L-type amino acid transporter.
rpsblast_kog gnl|CDD|36503 1 528 + 528 Gaps:33 91.82 550 44.36 1e-131 KOG1289 KOG1289 KOG1289 Amino acid transporters [Amino acid transport and metabolism].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 173 192 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 198 222 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 136 140 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 82 100 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 484 494 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 341 362 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PIRSF 44 523 480 PIRSF006060 none none IPR002293
PANTHER 7 528 522 PTHR11785 none none IPR002293
Phobius 495 514 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 38 62 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 162 172 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 423 427 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 112 135 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 49 502 454 PF13520 none Amino acid permease IPR002293
Phobius 312 340 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 448 458 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 193 197 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 428 447 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 223 288 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 141 161 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 515 529 15 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 7 528 522 PTHR11785:SF286 none none none
Phobius 400 422 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 19 523 505 TIGR00907 none 2A0304: amino acid permease IPR004756
Phobius 289 311 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 101 111 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 37 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 459 483 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 63 81 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 363 399 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

12 Localization

Analysis Start End Length
TMHMM 344 366 22
TMHMM 461 483 22
TMHMM 48 70 22
TMHMM 112 134 22
TMHMM 400 422 22
TMHMM 149 171 22
TMHMM 204 226 22
TMHMM 178 200 22
TMHMM 426 448 22
TMHMM 289 311 22
TMHMM 493 515 22
TMHMM 80 99 19

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting