Protein : Qrob_P0366580.2 Q. robur
Protein Identifier  ? Qrob_P0366580.2 Organism . Name  Quercus robur
Score  70.0 Score Type  egn
Protein Description  (M=1) PF00035//PF00636//PF14709 - Double-stranded RNA binding motif // Ribonuclease III domain // double strand RNA binding domain from DEAD END PROTEIN 1 Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 372  
Kegg Orthology  K11592
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264308 3 371 + 369 Gaps:12 18.11 1971 80.67 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|tcc:TCM_005016 1 371 + 371 Gaps:12 17.89 2007 80.78 0.0 Dicer-like 1 isoform 1
blastp_kegg lcl|pop:POPTR_0002s18240g 9 371 + 363 Gaps:12 17.84 1967 80.63 0.0 Endoribonuclease Dicer family protein
blastp_kegg lcl|csv:101219617 1 371 + 371 Gaps:12 18.08 1986 80.22 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|cmo:103483092 1 371 + 371 Gaps:12 18.04 1990 79.94 0.0 endoribonuclease Dicer homolog 1
blastp_kegg lcl|rcu:RCOM_1340690 9 371 + 363 Gaps:12 22.75 1543 81.20 0.0 dicer-1 putative (EC:3.1.26.3)
blastp_kegg lcl|cic:CICLE_v10018447mg 3 371 + 369 Gaps:12 18.19 1963 77.31 0.0 hypothetical protein
blastp_kegg lcl|cit:102629634 3 371 + 369 Gaps:12 18.19 1963 77.31 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|cam:101502324 1 371 + 371 Gaps:14 18.84 1895 77.31 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|gmx:100780953 1 371 + 371 Gaps:14 18.34 1947 80.39 0.0 endoribonuclease Dicer homolog 1-like
blastp_pdb 3c4t_A 20 257 + 238 Gaps:16 93.58 265 37.90 1e-41 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 20 257 + 238 Gaps:16 93.58 265 37.90 1e-41 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 20 187 + 168 Gaps:11 88.50 200 40.11 3e-35 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 20 187 + 168 Gaps:11 88.50 200 40.11 3e-35 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 20 187 + 168 Gaps:11 88.50 200 40.11 3e-35 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3n3w_B 19 253 + 235 Gaps:35 87.10 248 31.48 3e-12 mol:protein length:248 Ribonuclease III
blastp_pdb 3n3w_A 19 253 + 235 Gaps:35 87.10 248 31.48 3e-12 mol:protein length:248 Ribonuclease III
blastp_pdb 3o2r_D 19 173 + 155 Gaps:26 75.88 170 37.98 2e-10 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_B 19 173 + 155 Gaps:26 75.88 170 37.98 2e-10 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_C 19 173 + 155 Gaps:26 75.88 170 37.98 2e-10 mol:protein length:170 Ribonuclease III
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 9 367 + 359 Gaps:14 18.32 1883 77.10 0.0 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 7 371 + 365 Gaps:3 19.07 1909 74.45 2e-174 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 11 257 + 247 Gaps:5 17.58 1388 45.49 4e-53 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 23 363 + 341 Gaps:48 23.23 1580 35.97 1e-50 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 20 363 + 344 Gaps:71 24.05 1651 35.26 2e-48 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 18 262 + 245 Gaps:15 17.73 1410 39.60 4e-48 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 3 226 + 224 Gaps:12 13.07 1637 46.26 2e-47 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q9LTQ0|RTL2_ARATH 19 359 + 341 Gaps:29 81.84 391 34.06 9e-47 Ribonuclease 3-like protein 2 OS Arabidopsis thaliana GN RTL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 22 258 + 237 Gaps:22 77.93 299 44.21 8e-45 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 18 262 + 245 Gaps:19 17.86 1377 38.62 2e-42 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 289 280 PTHR14950 none none none
Pfam 57 169 113 PF00636 none Ribonuclease III domain IPR000999
Gene3D 19 188 170 G3DSA:1.10.1520.10 none none IPR000999
Pfam 294 365 72 PF14709 none double strand RNA binding domain from DEAD END PROTEIN 1 none
SUPERFAMILY 151 283 133 SSF54768 none none none
Gene3D 297 366 70 G3DSA:3.30.160.20 none none IPR014720
ProSiteProfiles 20 169 150 PS50142 none Ribonuclease III family domain profile. IPR000999
Pfam 196 254 59 PF00035 none Double-stranded RNA binding motif IPR014720
SUPERFAMILY 18 190 173 SSF69065 none none IPR000999
SMART 35 192 158 SM00535 none Ribonuclease III family IPR000999
Gene3D 194 257 64 G3DSA:3.30.160.20 none none IPR014720
PANTHER 10 289 280 PTHR14950:SF16 none none none
SMART 196 257 62 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 294 367 74 SM00358 none Double-stranded RNA binding motif IPR014720
ProSiteProfiles 293 368 76 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
ProSiteProfiles 195 258 64 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
SUPERFAMILY 297 366 70 SSF54768 none none none

0 Localization

0 Qtllist

0 Targeting