Protein : Qrob_P0366570.2 Q. robur
Protein Identifier  ? Qrob_P0366570.2 Organism . Name  Quercus robur
Score  38.1 Score Type  egn
Protein Description  (M=1) KOG0331//KOG0333//KOG0335//KOG0340//KOG0344//KOG0345//KOG0354//KOG0701//KOG1817//KOG3732 - ATP-dependent RNA helicase [RNA processing and modification]. // U5 snRNP-like RNA helicase subunit [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box like helicase [General function prediction only]. // dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. // Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking secretion and vesicular transport Transcription]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1540  
Kegg Orthology  K11592
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264308 11 1539 + 1529 Gaps:96 79.30 1971 86.37 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|pop:POPTR_0002s18240g 11 1539 + 1529 Gaps:95 79.61 1967 84.74 0.0 Endoribonuclease Dicer family protein
blastp_kegg lcl|tcc:TCM_005016 11 1539 + 1529 Gaps:98 77.78 2007 84.82 0.0 Dicer-like 1 isoform 1
blastp_kegg lcl|cmo:103483092 11 1539 + 1529 Gaps:93 78.69 1990 84.80 0.0 endoribonuclease Dicer homolog 1
blastp_kegg lcl|cic:CICLE_v10018447mg 13 1539 + 1527 Gaps:96 79.52 1963 84.56 0.0 hypothetical protein
blastp_kegg lcl|cit:102629634 13 1539 + 1527 Gaps:96 79.52 1963 84.50 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|rcu:RCOM_1340690 34 1539 + 1506 Gaps:95 100.00 1543 85.68 0.0 dicer-1 putative (EC:3.1.26.3)
blastp_kegg lcl|csv:101219617 11 1539 + 1529 Gaps:96 78.70 1986 84.58 0.0 endoribonuclease Dicer homolog 1-like
blastp_kegg lcl|pvu:PHAVU_009G260000g 13 1539 + 1527 Gaps:98 80.05 1950 85.46 0.0 hypothetical protein
blastp_kegg lcl|gmx:100811631 13 1539 + 1527 Gaps:98 80.26 1945 85.27 0.0 endoribonuclease Dicer homolog 1-like
blastp_pdb 3c4t_A 1200 1439 + 240 Gaps:15 94.72 265 40.24 5e-43 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 1200 1439 + 240 Gaps:15 94.72 265 40.24 5e-43 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 1200 1366 + 167 Gaps:10 88.50 200 42.37 4e-36 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 1200 1366 + 167 Gaps:10 88.50 200 42.37 4e-36 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 1200 1366 + 167 Gaps:10 88.50 200 42.37 4e-36 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2ykg_A 3 485 + 483 Gaps:82 65.95 696 28.76 5e-19 mol:protein length:696 PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
blastp_pdb 3tmi_A 3 485 + 483 Gaps:82 66.04 695 29.41 6e-19 mol:protein length:695 ATP-dependent RNA helicase DDX58
blastp_pdb 3n3w_B 1199 1435 + 237 Gaps:36 88.31 248 35.16 4e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3n3w_A 1199 1435 + 237 Gaps:36 88.31 248 35.16 4e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3o2r_D 1199 1350 + 152 Gaps:27 74.71 170 44.09 2e-14 mol:protein length:170 Ribonuclease III
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 14 1536 + 1523 Gaps:109 82.00 1883 79.47 0.0 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 11 1539 + 1529 Gaps:117 81.93 1909 78.45 0.0 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 12 1536 + 1525 Gaps:187 70.06 1580 34.96 2e-97 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 12 1405 + 1394 Gaps:167 70.74 1637 35.75 3e-95 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 12 1536 + 1525 Gaps:282 84.37 1651 34.60 5e-91 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 12 1436 + 1425 Gaps:247 84.65 1388 38.47 4e-85 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 14 1441 + 1428 Gaps:240 79.50 1410 37.91 3e-84 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 14 1435 + 1422 Gaps:267 78.29 1377 37.38 9e-80 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 14 1436 + 1423 Gaps:235 71.09 1657 36.67 4e-78 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 13 1451 + 1439 Gaps:197 68.45 1702 35.28 9e-73 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2

47 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 810 1001 192 SM00949 none none IPR003100
Pfam 362 433 72 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSiteProfiles 320 482 163 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Coils 136 157 22 Coil none none none
SMART 1016 1179 164 SM00535 none Ribonuclease III family IPR000999
SMART 1215 1371 157 SM00535 none Ribonuclease III family IPR000999
Pfam 510 590 81 PF03368 none Dicer dimerisation domain IPR005034
ProSiteProfiles 1020 1159 140 PS50142 none Ribonuclease III family domain profile. IPR000999
Gene3D 1465 1534 70 G3DSA:3.30.160.20 none none IPR014720
ProSiteProfiles 1461 1536 76 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
SMART 350 436 87 SM00490 none helicase superfamily c-terminal domain IPR001650
Gene3D 965 977 13 G3DSA:2.170.260.10 none none none
Gene3D 843 909 67 G3DSA:2.170.260.10 none none none
PANTHER 945 1468 524 PTHR14950 none none none
PANTHER 13 745 733 PTHR14950 none none none
ProSiteProfiles 1200 1348 149 PS50142 none Ribonuclease III family domain profile. IPR000999
ProSitePatterns 1235 1243 9 PS00517 none Ribonuclease III family signature. IPR000999
PANTHER 945 1468 524 PTHR14950:SF16 none none none
PANTHER 13 745 733 PTHR14950:SF16 none none none
SUPERFAMILY 1139 1177 39 SSF69065 none none IPR000999
SUPERFAMILY 993 1080 88 SSF69065 none none IPR000999
SUPERFAMILY 317 448 132 SSF52540 none none IPR027417
SUPERFAMILY 9 114 106 SSF52540 none none IPR027417
ProSiteProfiles 1374 1437 64 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
ProSiteProfiles 509 594 86 PS51327 none Dicer double-stranded RNA-binding fold domain profile. IPR005034
SUPERFAMILY 1465 1534 70 SSF54768 none none none
ProSiteProfiles 825 977 153 PS50821 none PAZ domain profile. IPR003100
Pfam 1375 1435 61 PF00035 none Double-stranded RNA binding motif IPR014720
Gene3D 1373 1436 64 G3DSA:3.30.160.20 none none IPR014720
PANTHER 820 921 102 PTHR14950:SF16 none none none

0 Localization

0 Qtllist

0 Targeting