10 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0004725 | protein tyrosine phosphatase activity | Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. |
GO:0016311 | dephosphorylation | The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. |
GO:0016791 | phosphatase activity | Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. |
GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
GO:0006470 | protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
GO:0006397 | mRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. |
GO:0006370 | 7-methylguanosine mRNA capping | Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript. |
GO:0004484 | mRNA guanylyltransferase activity | Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue. |
GO:0004651 | polynucleotide 5'-phosphatase activity | Catalysis of the reaction: 5'-phosphopolynucleotide + H2O = polynucleotide + phosphate. |
37 Blast
15 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
SMART | 78 | 227 | 150 | SM00195 | none | Dual specificity phosphatase, catalytic domain | IPR020422 |
Pfam | 504 | 601 | 98 | PF03919 | "MetaCyc:PWY-7375" | mRNA capping enzyme, C-terminal domain | IPR013846 |
PIRSF | 39 | 632 | 594 | PIRSF036958 | "MetaCyc:PWY-7375" | none | IPR017074 |
Gene3D | 50 | 247 | 198 | G3DSA:3.90.190.10 | none | none | IPR029021 |
SUPERFAMILY | 51 | 244 | 194 | SSF52799 | none | none | IPR029021 |
ProSitePatterns | 169 | 179 | 11 | PS00383 | none | Tyrosine specific protein phosphatases active site. | IPR016130 |
Pfam | 313 | 501 | 189 | PF01331 | "MetaCyc:PWY-7375" | mRNA capping enzyme, catalytic domain | IPR001339 |
ProSiteProfiles | 147 | 219 | 73 | PS50056 | none | Tyrosine specific protein phosphatases family profile. | IPR000387 |
SUPERFAMILY | 504 | 617 | 114 | SSF50249 | none | none | IPR012340 |
Gene3D | 505 | 621 | 117 | G3DSA:2.40.50.140 | none | none | IPR012340 |
Gene3D | 301 | 437 | 137 | G3DSA:3.30.470.30 | none | none | none |
SUPERFAMILY | 272 | 502 | 231 | SSF56091 | none | none | none |
PANTHER | 51 | 630 | 580 | PTHR10367:SF0 | none | none | none |
PANTHER | 51 | 630 | 580 | PTHR10367 | none | none | none |
Pfam | 103 | 225 | 123 | PF00782 | none | Dual specificity phosphatase, catalytic domain | IPR000340 |
9 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2004_QTL1_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AMVCC_444 | s_1BE1VC_321 | 4 | 0 | 31 | lod | 3,2 | 7,4 |
Bourran2_2003_QTL8_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AH7I_610 | s_1BE1VC_321 | 4,6 | 0 | 28 | lod | 3,5 | 7,4 |
Bourran2_2007_QTL6_peak_Bud_burst_3P | Qrob_Chr01 | 1 | s_1BE1VC_321 | s_1A5JRZ_890 | 5 | 0 | 25 | lod | 2,4 | 6 |
Bourran2_2014_nEpiBC_3P | Qrob_Chr01 | 1 | v_1588_550 | s_1AZJRA_1600 | 30,48 | 9,48 | 43,98 | lod | 2,3642 | 6,3 |
Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
Bourran2_2014_nSeqBC*_A4 | Qrob_Chr01 | 1 | s_1CFE4C_2114 | s_1BDNCB_819 | 15,25 | 2 | 28,5 | lod | 2,9903 | 8,3 |