Protein : Qrob_P0359120.2 Q. robur
Protein Identifier  ? Qrob_P0359120.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) KOG2402 - Paf1/RNA polymerase II complex RTF1 component (involved in regulation of TATA box-binding protein) [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1069  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10004215mg 1 1068 + 1068 Gaps:90 99.73 1093 50.64 0.0 hypothetical protein
blastp_kegg lcl|cit:102619163 1 1068 + 1068 Gaps:98 100.00 1086 50.64 0.0 dentin sialophosphoprotein-like
blastp_kegg lcl|pmum:103324160 1 1068 + 1068 Gaps:112 99.32 1031 52.25 0.0 uncharacterized LOC103324160
blastp_kegg lcl|tcc:TCM_020791 1 1068 + 1068 Gaps:107 100.00 1087 49.59 0.0 Zinc knuckle family protein putative isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000744mg 1 1068 + 1068 Gaps:148 100.00 1016 51.87 0.0 hypothetical protein
blastp_kegg lcl|pxb:103939431 3 1068 + 1066 Gaps:105 99.71 1034 48.11 0.0 uncharacterized LOC103939431
blastp_kegg lcl|pxb:103967246 3 1068 + 1066 Gaps:105 99.71 1034 47.91 0.0 uncharacterized LOC103967246
blastp_kegg lcl|pop:POPTR_0008s16240g 1 1033 + 1033 Gaps:117 99.90 1045 47.41 0.0 POPTRDRAFT_766434 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0908960 1 1063 + 1063 Gaps:161 98.03 1067 46.75 0.0 hypothetical protein
blastp_kegg lcl|fve:101293145 1 1036 + 1036 Gaps:128 93.98 1079 46.45 0.0 uncharacterized protein LOC101293145
rpsblast_cdd gnl|CDD|197843 942 1043 + 102 Gaps:7 96.33 109 23.81 7e-12 smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein which interacts with Spt6p and in parsley CIP which interacts with the bZIP protein CPRF1.
rpsblast_cdd gnl|CDD|190531 945 1042 + 98 Gaps:6 97.14 105 25.49 9e-11 pfam03126 Plus-3 Plus-3 domain. This domain is about 90 residues in length and is often found associated with the pfam02213 domain. The function of this domain is uncertain. It is possible that this domain is involved in DNA binding as it has three conserved positively charged residues hence this domain has been named the plus-3 domain. It is found in yeast Rtf1 which may be a transcription elongation factor.
rpsblast_kog gnl|CDD|37613 860 1062 + 203 Gaps:14 40.19 525 18.96 5e-07 KOG2402 KOG2402 KOG2402 Paf1/RNA polymerase II complex RTF1 component (involved in regulation of TATA box-binding protein) [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 939 1068 130 PS51360 none Plus3 domain profile. IPR004343
SUPERFAMILY 942 1062 121 SSF159042 none none none
SMART 816 832 17 SM00343 none zinc finger IPR001878
SMART 775 791 17 SM00343 none zinc finger IPR001878
ProSiteProfiles 776 791 16 PS50158 none Zinc finger CCHC-type profile. IPR001878
Pfam 944 1042 99 PF03126 none Plus-3 domain IPR004343
Gene3D 772 832 61 G3DSA:4.10.60.10 none none IPR001878
SMART 942 1045 104 SM00719 none Short conserved domain in transcriptional regulators. IPR018144

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting