Protein : Qrob_P0358950.2 Q. robur
Protein Identifier  ? Qrob_P0358950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K05575 - NADH dehydrogenase I subunit 4 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 660  
Kegg Orthology  K05575
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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.
GO:0009773 photosynthetic electron transport in photosystem I A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_7g021720 97 657 + 561 Gaps:26 100.00 587 76.49 0.0 Photosystem I iron-sulfur center
blastp_kegg lcl|cam:101489191 97 657 + 561 Gaps:28 100.00 587 78.19 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic-like
blastp_kegg lcl|mtr:MTR_4g006120 97 657 + 561 Gaps:40 100.00 573 78.18 0.0 NADH dehydrogenase subunit
blastp_kegg lcl|pmum:18668091 178 658 + 481 Gaps:14 99.00 500 84.85 0.0 ndhD CP95_p015 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|pper:PrpeC_p072 178 658 + 481 Gaps:14 99.00 500 84.85 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|fve:10251583 178 658 + 481 Gaps:14 99.00 500 84.65 0.0 ndhD FvH4_C0105 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|sly:3950410 178 658 + 481 Gaps:14 99.00 500 80.61 0.0 ndhD LyesC2p017 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|sot:4099905 178 658 + 481 Gaps:14 99.00 500 80.61 0.0 ndhD ndh4 SotuCp075 NADH dehydrogenase subunit 4
blastp_kegg lcl|rcu:RCOM_ORF00106 171 658 + 488 Gaps:14 99.21 506 79.28 0.0 ndhD NADH dehydrogenase subunit 4
blastp_kegg lcl|cit:4271114 178 659 + 482 Gaps:14 99.40 499 80.04 0.0 ndhD CisiCp073 NADH dehydrogenase subunit 4
blastp_pdb 3rko_C 177 656 + 480 Gaps:50 97.05 509 31.98 8e-62 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 177 656 + 480 Gaps:50 97.05 509 31.98 8e-62 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3lw5_C 97 162 + 66 none 81.48 81 98.48 1e-43 mol:protein length:81 Photosystem I iron-sulfur center
blastp_pdb 2wsf_C 97 162 + 66 none 81.48 81 98.48 1e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wse_C 97 162 + 66 none 81.48 81 98.48 1e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wsc_C 97 162 + 66 none 81.48 81 98.48 1e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2o01_C 98 162 + 65 none 81.25 80 98.46 7e-43 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 3pcq_C 98 162 + 65 none 81.25 80 89.23 5e-41 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 1jb0_C 98 162 + 65 none 81.25 80 89.23 5e-41 mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 1k0t_A 98 162 + 65 none 81.25 80 90.77 6e-41 mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I
blastp_uniprot_sprot sp|Q68RV6|NU4C_PANGI 176 658 + 483 Gaps:14 99.40 500 80.68 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Panax ginseng GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q09WW8|NU4C_MORIN 178 658 + 481 Gaps:14 99.00 500 81.21 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Morus indica GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2A7B8|NU4C_SOLLC 178 658 + 481 Gaps:14 99.00 500 80.61 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum lycopersicum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|B1NWJ9|NU4C_MANES 178 658 + 481 Gaps:14 99.00 500 80.81 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Manihot esculenta GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXG6|NU4C_LACSA 178 658 + 481 Gaps:14 99.00 500 79.60 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Lactuca sativa GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2VED0|NU4C_SOLTU 178 658 + 481 Gaps:14 99.00 500 80.40 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum tuberosum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8U7|NU4C_ATRBE 178 658 + 481 Gaps:14 99.00 500 80.20 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Atropa belladonna GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9R2|NU4C_DAUCA 176 657 + 482 Gaps:14 99.20 500 79.64 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Daucus carota GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q33BX2|NU4C_NICTO 178 658 + 481 Gaps:14 99.00 500 80.40 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tomentosiformis GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|P06262|NU4C_TOBAC 178 658 + 481 Gaps:14 99.00 500 80.40 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tabacum GN ndhD PE 2 SV 2

49 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 485 489 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 549 553 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 311 330 20 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 539 565 27 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 341 365 25 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 487 506 20 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
Phobius 259 279 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 107 118 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
SUPERFAMILY 103 197 95 SSF54862 none none none
Phobius 286 303 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 454 464 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 178 658 481 PTHR22773 none none none
Pfam 6 51 46 PF00420 none NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IPR001133
Phobius 580 602 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Hamap 1 84 84 MF_01456 none NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. IPR001133
ProSitePatterns 144 155 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Phobius 554 573 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 622 643 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 230 258 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 280 285 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 181 656 476 TIGR01972 none NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M IPR010227
TIGRFAM 98 163 66 TIGR03048 "MetaCyc:PWY-101","MetaCyc:PWY-6785" PS_I_psaC: photosystem I iron-sulfur protein PsaC IPR017491
Phobius 198 208 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 104 163 60 G3DSA:3.30.70.20 none none none
Phobius 603 621 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 135 164 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 435 453 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 309 329 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 574 579 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

14 Localization

Analysis Start End Length
TMHMM 525 547 22
TMHMM 464 481 17
TMHMM 551 573 22
TMHMM 375 397 22
TMHMM 341 363 22
TMHMM 205 227 22
TMHMM 435 457 22
TMHMM 7 24 17
TMHMM 259 281 22
TMHMM 309 331 22
TMHMM 622 644 22
TMHMM 580 602 22
TMHMM 491 513 22
TMHMM 176 198 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting