Protein : Qrob_P0358620.2 Q. robur
Protein Identifier  ? Qrob_P0358620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) KOG2866 - Uncharacterized conserved protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 390  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0030915 Smc5-Smc6 complex A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100255522 2 377 + 376 Gaps:9 97.11 380 62.33 2e-157 non-structural maintenance of chromosome element 4-like
blastp_kegg lcl|pop:POPTR_0016s04710g 32 374 + 343 Gaps:11 86.91 382 62.05 2e-143 POPTRDRAFT_255616 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s04610g 55 384 + 330 Gaps:8 97.87 329 63.04 7e-143 hypothetical protein
blastp_kegg lcl|mus:103981002 28 358 + 331 Gaps:6 87.13 373 64.62 2e-142 non-structural maintenance of chromosomes element 4 homolog A
blastp_kegg lcl|pper:PRUPE_ppa021335mg 29 384 + 356 Gaps:3 94.23 381 58.77 5e-142 hypothetical protein
blastp_kegg lcl|pmum:103339424 29 384 + 356 Gaps:3 93.98 382 58.22 2e-141 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|pda:103720259 32 358 + 327 Gaps:3 85.56 381 60.74 2e-137 non-structural maintenance of chromosomes element 4 homolog A
blastp_kegg lcl|sot:102578384 32 358 + 327 none 81.75 400 58.72 5e-137 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|sly:101251938 32 358 + 327 none 81.75 400 58.72 6e-137 non-structural maintenance of chromosome element 4-like
blastp_kegg lcl|pop:POPTR_0003s21830g 4 357 + 354 Gaps:14 92.11 393 54.14 5e-132 POPTRDRAFT_758363 hypothetical protein
blastp_uniprot_sprot sp|Q9C689|NSE4A_ARATH 34 373 + 340 Gaps:2 84.86 403 49.42 5e-111 Non-structural maintenance of chromosomes element 4 homolog A OS Arabidopsis thaliana GN NSE4A PE 2 SV 1
blastp_uniprot_sprot sp|F4JET1|NSE4B_ARATH 25 369 + 345 Gaps:28 85.90 383 49.24 8e-98 Non-structural maintenance of chromosomes element 4 homolog B OS Arabidopsis thaliana GN NSE4B PE 2 SV 1
blastp_uniprot_sprot sp|Q6BDR8|NSE4_SCHPO 36 322 + 287 Gaps:10 97.00 300 22.68 2e-14 Non-structural maintenance of chromosome element 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nse4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9NXX6|NSE4A_HUMAN 7 320 + 314 Gaps:27 85.97 385 23.56 2e-13 Non-structural maintenance of chromosomes element 4 homolog A OS Homo sapiens GN NSMCE4A PE 1 SV 2
blastp_uniprot_sprot sp|Q2TBI1|NSE4A_BOVIN 7 310 + 304 Gaps:29 82.98 382 24.29 4e-13 Non-structural maintenance of chromosomes element 4 homolog A OS Bos taurus GN NSMCE4A PE 2 SV 1
blastp_uniprot_sprot sp|A6QPC8|EID3_BOVIN 38 310 + 273 Gaps:29 77.04 379 22.95 4e-10 EP300-interacting inhibitor of differentiation 3 OS Bos taurus GN EID3 PE 2 SV 1
blastp_uniprot_sprot sp|Q3V124|EID3_MOUSE 25 310 + 286 Gaps:40 82.13 375 24.68 1e-09 EP300-interacting inhibitor of differentiation 3 OS Mus musculus GN Eid3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8N140|EID3_HUMAN 38 310 + 273 Gaps:34 87.39 333 23.37 4e-09 EP300-interacting inhibitor of differentiation 3 OS Homo sapiens GN EID3 PE 1 SV 1
blastp_uniprot_sprot sp|Q4V8G2|EID3_RAT 38 310 + 273 Gaps:28 75.19 387 23.37 9e-09 EP300-interacting inhibitor of differentiation 3 OS Rattus norvegicus GN Eid3 PE 2 SV 2
blastp_uniprot_sprot sp|A5LFW4|EID3_MACFA 22 310 + 289 Gaps:24 82.75 371 21.82 3e-08 EP300-interacting inhibitor of differentiation 3 OS Macaca fascicularis GN EID3 PE 2 SV 1
rpsblast_cdd gnl|CDD|204049 36 313 + 278 Gaps:26 99.67 305 30.26 2e-55 pfam08743 Nse4 Nse4. Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1.
rpsblast_cdd gnl|CDD|34726 163 310 + 148 Gaps:14 55.60 259 23.61 2e-09 COG5125 COG5125 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|38077 3 320 + 318 Gaps:23 93.12 349 31.38 6e-41 KOG2866 KOG2866 KOG2866 Uncharacterized conserved protein [Function unknown].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 27 366 340 PTHR16140 none none IPR027786
PANTHER 27 366 340 PTHR16140:SF0 none none none
Pfam 222 313 92 PF08743 none Nse4 C-terminal IPR014854

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting