Protein : Qrob_P0357720.2 Q. robur
Protein Identifier  ? Qrob_P0357720.2 Organism . Name  Quercus robur
Score  47.2 Score Type  egn
Protein Description  (M=20) K00025 - malate dehydrogenase [EC:1.1.1.37] Code Enzyme  EC:1.1.1.37
Gene Prediction Quality  validated Protein length 

Sequence

Length: 319  
Kegg Orthology  K00025
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0006108 malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
GO:0016615 malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101221189 1 318 + 318 Gaps:16 91.76 364 76.05 2e-172 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|cmo:103483128 1 318 + 318 Gaps:16 91.76 364 75.15 7e-172 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|cic:CICLE_v10021075mg 3 318 + 316 Gaps:16 100.00 332 75.00 6e-171 hypothetical protein
blastp_kegg lcl|cit:102615934 1 318 + 318 Gaps:16 91.26 366 74.55 3e-169 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|rcu:RCOM_1609380 3 318 + 316 Gaps:16 100.00 332 75.90 2e-168 malate dehydrogenase putative (EC:1.1.1.37)
blastp_kegg lcl|pxb:103953311 1 318 + 318 Gaps:16 88.83 376 74.55 5e-168 malate dehydrogenase-like
blastp_kegg lcl|mdm:103435358 1 318 + 318 Gaps:16 88.83 376 74.25 3e-167 malate dehydrogenase-like
blastp_kegg lcl|vvi:100256452 3 318 + 316 Gaps:16 100.00 332 74.10 2e-166 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|gmx:100783188 1 318 + 318 Gaps:16 89.54 373 73.05 6e-166 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|pxb:103932637 1 318 + 318 Gaps:16 88.83 376 73.95 7e-166 malate dehydrogenase-like
blastp_pdb 5mdh_B 6 318 + 313 Gaps:17 99.10 333 53.94 8e-110 mol:protein length:333 MALATE DEHYDROGENASE
blastp_pdb 5mdh_A 6 318 + 313 Gaps:17 99.10 333 53.94 8e-110 mol:protein length:333 MALATE DEHYDROGENASE
blastp_pdb 4mdh_B 6 318 + 313 Gaps:17 98.80 334 53.94 9e-110 mol:protein length:334 CYTOPLASMIC MALATE DEHYDROGENASE
blastp_pdb 4mdh_A 6 318 + 313 Gaps:17 98.80 334 53.94 9e-110 mol:protein length:334 CYTOPLASMIC MALATE DEHYDROGENASE
blastp_pdb 2cvq_B 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 Malate dehydrogenase
blastp_pdb 2cvq_A 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 Malate dehydrogenase
blastp_pdb 1y7t_B 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 Malate dehydrogenase
blastp_pdb 1y7t_A 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 Malate dehydrogenase
blastp_pdb 1iz9_B 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 MALATE DEHYDROGENASE
blastp_pdb 1iz9_A 5 311 + 307 Gaps:21 97.25 327 51.89 2e-92 mol:protein length:327 MALATE DEHYDROGENASE
blastp_uniprot_sprot sp|Q7XDC8|MDHC_ORYSJ 3 318 + 316 Gaps:16 100.00 332 72.59 1e-166 Malate dehydrogenase cytoplasmic OS Oryza sativa subsp. japonica GN Os10g0478200 PE 1 SV 3
blastp_uniprot_sprot sp|O48905|MDHC_MEDSA 3 318 + 316 Gaps:16 100.00 332 72.29 5e-166 Malate dehydrogenase cytoplasmic OS Medicago sativa GN CMDH PE 1 SV 1
blastp_uniprot_sprot sp|Q08062|MDHC_MAIZE 3 317 + 315 Gaps:16 99.70 332 72.81 1e-165 Malate dehydrogenase cytoplasmic OS Zea mays PE 1 SV 2
blastp_uniprot_sprot sp|Q9FSF0|MDH_TOBAC 3 317 + 315 Gaps:16 99.70 332 71.90 4e-163 Malate dehydrogenase OS Nicotiana tabacum GN MD1 PE 1 SV 1
blastp_uniprot_sprot sp|O24047|MDHC_MESCR 3 317 + 315 Gaps:16 99.70 332 72.21 1e-160 Malate dehydrogenase cytoplasmic OS Mesembryanthemum crystallinum GN MDH PE 2 SV 1
blastp_uniprot_sprot sp|P57106|MDHC2_ARATH 3 318 + 316 Gaps:16 100.00 332 71.08 2e-159 Malate dehydrogenase cytoplasmic 2 OS Arabidopsis thaliana GN At5g43330 PE 2 SV 1
blastp_uniprot_sprot sp|P93819|MDHC1_ARATH 3 318 + 316 Gaps:16 100.00 332 70.78 7e-159 Malate dehydrogenase cytoplasmic 1 OS Arabidopsis thaliana GN At1g04410 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SML8|MDHC_BETVU 3 317 + 315 Gaps:16 99.70 332 70.39 2e-157 Malate dehydrogenase cytoplasmic OS Beta vulgaris GN NR1 PE 1 SV 1
blastp_uniprot_sprot sp|P40925|MDHC_HUMAN 6 318 + 313 Gaps:17 98.80 334 54.24 1e-110 Malate dehydrogenase cytoplasmic OS Homo sapiens GN MDH1 PE 1 SV 4
blastp_uniprot_sprot sp|O88989|MDHC_RAT 6 318 + 313 Gaps:17 98.80 334 54.24 3e-110 Malate dehydrogenase cytoplasmic OS Rattus norvegicus GN Mdh1 PE 1 SV 3

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 5 154 150 G3DSA:3.40.50.720 none none IPR016040
Gene3D 155 317 163 G3DSA:3.90.110.10 none none IPR015955
Phobius 22 27 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 28 318 291 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 155 167 13 PS00068 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383","Reactome:REACT_474" Malate dehydrogenase active site signature. IPR001252
PIRSF 4 311 308 PIRSF000102 none none IPR001557
Pfam 8 152 145 PF00056 none lactate/malate dehydrogenase, NAD binding domain IPR001236
Phobius 1 27 27 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 4 154 151 SSF51735 none none none
TIGRFAM 6 312 307 TIGR01759 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383" MalateDH-SF1: malate dehydrogenase IPR010945
PANTHER 1 318 318 PTHR23382 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383";signature_desc=MALATE DEHYDROGENASE none IPR010945
SUPERFAMILY 156 317 162 SSF56327 none none IPR015955
Pfam 156 289 134 PF02866 none lactate/malate dehydrogenase, alpha/beta C-terminal domain IPR022383
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting