Protein : Qrob_P0357210.2 Q. robur
Protein Identifier  ? Qrob_P0357210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 358  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0045893 positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_010G146300g 1 357 + 357 Gaps:38 100.00 347 69.16 3e-152 hypothetical protein
blastp_kegg lcl|gmx:100776605 1 357 + 357 Gaps:40 83.61 415 67.44 3e-151 GATA transcription factor 9-like
blastp_kegg lcl|fve:101307314 1 357 + 357 Gaps:46 100.00 335 70.75 1e-147 GATA transcription factor 9-like
blastp_kegg lcl|pper:PRUPE_ppa017460mg 1 357 + 357 Gaps:46 100.00 323 71.52 5e-144 hypothetical protein
blastp_kegg lcl|mdm:103454849 1 357 + 357 Gaps:45 100.00 328 70.12 2e-140 GATA transcription factor 9-like
blastp_kegg lcl|pxb:103966616 1 357 + 357 Gaps:49 100.00 332 69.28 4e-140 GATA transcription factor 9-like
blastp_kegg lcl|pmum:103327851 1 357 + 357 Gaps:45 100.00 322 71.43 5e-139 GATA transcription factor 9-like
blastp_kegg lcl|cit:102630982 1 357 + 357 Gaps:53 100.00 334 65.57 2e-137 GATA transcription factor 12-like
blastp_kegg lcl|cam:101510199 20 357 + 338 Gaps:50 94.67 338 67.50 4e-137 GATA transcription factor 9-like
blastp_kegg lcl|cmo:103500789 1 357 + 357 Gaps:52 98.52 338 65.47 1e-136 GATA transcription factor 9-like
blastp_uniprot_sprot sp|O82632|GATA9_ARATH 30 357 + 328 Gaps:41 95.13 308 52.56 3e-82 GATA transcription factor 9 OS Arabidopsis thaliana GN GATA9 PE 2 SV 1
blastp_uniprot_sprot sp|P69781|GAT12_ARATH 29 357 + 329 Gaps:58 96.98 331 48.91 5e-74 GATA transcription factor 12 OS Arabidopsis thaliana GN GATA12 PE 2 SV 1
blastp_uniprot_sprot sp|O49741|GATA2_ARATH 93 316 + 224 Gaps:54 71.97 264 60.00 1e-53 GATA transcription factor 2 OS Arabidopsis thaliana GN GATA2 PE 2 SV 1
blastp_uniprot_sprot sp|O49743|GATA4_ARATH 91 311 + 221 Gaps:55 70.00 240 60.71 1e-48 GATA transcription factor 4 OS Arabidopsis thaliana GN GATA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH57|GATA5_ARATH 94 309 + 216 Gaps:38 64.31 339 44.50 4e-40 GATA transcription factor 5 OS Arabidopsis thaliana GN GATA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SD38|GATA6_ARATH 30 321 + 292 Gaps:62 88.46 312 42.75 8e-39 GATA transcription factor 6 OS Arabidopsis thaliana GN GATA6 PE 2 SV 1
blastp_uniprot_sprot sp|O65515|GATA7_ARATH 31 308 + 278 Gaps:56 93.28 238 45.50 3e-37 GATA transcription factor 7 OS Arabidopsis thaliana GN GATA7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L4M6|GATA3_ARATH 90 310 + 221 Gaps:62 64.31 269 52.02 2e-35 GATA transcription factor 3 OS Arabidopsis thaliana GN GATA3 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LAU9|GATA1_ARATH 221 307 + 87 Gaps:4 30.29 274 69.88 4e-34 GATA transcription factor 1 OS Arabidopsis thaliana GN GATA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DBP8|GAT11_ARATH 181 311 + 131 Gaps:17 46.20 303 51.43 5e-34 GATA transcription factor 11 OS Arabidopsis thaliana GN GATA11 PE 2 SV 1
rpsblast_cdd gnl|CDD|197702 238 291 + 54 Gaps:2 100.00 52 46.15 7e-12 smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
rpsblast_cdd gnl|CDD|109380 243 278 + 36 none 100.00 36 52.78 3e-10 pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
rpsblast_cdd gnl|CDD|29259 242 298 + 57 Gaps:3 100.00 54 40.74 9e-09 cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.
rpsblast_kog gnl|CDD|36814 40 309 + 270 Gaps:16 78.24 340 27.44 1e-08 KOG1601 KOG1601 KOG1601 GATA-4/5/6 transcription factors [Transcription].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 237 287 51 SM00401 none zinc finger binding to DNA consensus sequence [AT]GATA[AG] IPR000679
PANTHER 235 333 99 PTHR10071 none none none
Pfam 243 277 35 PF00320 none GATA zinc finger IPR000679
ProSitePatterns 243 268 26 PS00344 none GATA-type zinc finger domain. IPR000679
PANTHER 235 333 99 PTHR10071:SF161 none none none
PANTHER 24 30 7 PTHR10071 none none none
PANTHER 24 30 7 PTHR10071:SF161 none none none
ProSiteProfiles 237 273 37 PS50114 none GATA-type zinc finger domain profile. IPR000679
SUPERFAMILY 239 300 62 SSF57716 none none none
Gene3D 237 274 38 G3DSA:3.30.50.10 none none IPR013088
PIRSF 18 329 312 PIRSF016992 none none IPR016679

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting