Protein : Qrob_P0354920.2 Q. robur
Protein Identifier  ? Qrob_P0354920.2 Organism . Name  Quercus robur
Score  65.0 Score Type  egn
Protein Description  (M=3) PTHR23430//PTHR23430:SF15 - HISTONE H2A // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 145  
Kegg Orthology  K11251
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_006G095800g 1 144 + 144 Gaps:4 100.00 140 99.29 1e-90 hypothetical protein
blastp_kegg lcl|gmx:100305465 1 144 + 144 Gaps:4 100.00 140 99.29 1e-90 uncharacterized LOC100305465
blastp_kegg lcl|cic:CICLE_v10002804mg 1 144 + 144 Gaps:4 100.00 140 99.29 1e-90 hypothetical protein
blastp_kegg lcl|cit:102620423 1 144 + 144 Gaps:4 100.00 140 99.29 1e-90 histone H2AX-like
blastp_kegg lcl|tcc:TCM_026503 1 144 + 144 Gaps:4 100.00 140 97.86 5e-90 Histone superfamily protein
blastp_kegg lcl|pop:POPTR_0013s02990g 8 144 + 137 none 74.05 185 97.81 6e-90 POPTRDRAFT_729700 hypothetical protein
blastp_kegg lcl|pop:POPTR_0369s00210g 8 144 + 137 none 96.48 142 98.54 8e-90 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s04260g 8 144 + 137 none 96.48 142 98.54 8e-90 histone H2A family protein
blastp_kegg lcl|cmo:103492212 1 144 + 144 Gaps:4 100.00 140 97.86 2e-89 histone H2AX
blastp_kegg lcl|csv:101223546 1 144 + 144 Gaps:4 100.00 140 97.86 2e-89 probable histone H2AXb-like
blastp_pdb 1id3_G 26 144 + 119 Gaps:4 87.79 131 75.65 1e-57 mol:protein length:131 HISTONE H2A.1
blastp_pdb 1id3_C 26 144 + 119 Gaps:4 87.79 131 75.65 1e-57 mol:protein length:131 HISTONE H2A.1
blastp_pdb 1p3p_G 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3p_C 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3o_G 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3o_C 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3m_G 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3m_C 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3l_G 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3l_C 11 134 + 124 none 96.12 129 70.97 3e-57 mol:protein length:129 Histone H2A
blastp_uniprot_sprot sp|Q9S9K7|H2AXB_ARATH 1 144 + 144 Gaps:2 100.00 142 95.07 2e-89 Probable histone H2AXb OS Arabidopsis thaliana GN At1g54690 PE 1 SV 1
blastp_uniprot_sprot sp|O04848|H2AXA_ARATH 6 144 + 139 none 97.89 142 94.24 4e-89 Probable histone H2AXa OS Arabidopsis thaliana GN At1g08880 PE 1 SV 1
blastp_uniprot_sprot sp|O65759|H2AX_CICAR 1 144 + 144 Gaps:5 100.00 139 96.40 1e-88 Histone H2AX OS Cicer arietinum GN HIS2A PE 2 SV 1
blastp_uniprot_sprot sp|P35063|H2AX_PICAB 1 144 + 144 Gaps:6 100.00 138 92.03 2e-83 Histone H2AX OS Picea abies PE 2 SV 1
blastp_uniprot_sprot sp|Q2QPG9|H2AXB_ORYSJ 25 144 + 120 none 86.96 138 93.33 4e-74 Probable histone H2AXb OS Oryza sativa subsp. japonica GN Os12g0530000 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZL69|H2AXB_ORYSI 25 144 + 120 none 86.96 138 93.33 4e-74 Probable histone H2AXb OS Oryza sativa subsp. indica GN OsI_037312 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LLP5|H2AXA_ORYSJ 18 144 + 127 Gaps:1 91.97 137 90.48 2e-69 Probable histone H2AXa OS Oryza sativa subsp. japonica GN Os03g0721900 PE 3 SV 1
blastp_uniprot_sprot sp|A2XLI0|H2AXA_ORYSI 18 144 + 127 Gaps:1 91.97 137 90.48 2e-69 Probable histone H2AXa OS Oryza sativa subsp. indica GN OsI_012923 PE 3 SV 1
blastp_uniprot_sprot sp|O81826|H2A3_ARATH 15 134 + 120 Gaps:4 94.66 131 85.48 6e-67 Probable histone H2A.3 OS Arabidopsis thaliana GN At4g27230 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LD28|H2A6_ARATH 7 134 + 128 Gaps:3 96.15 130 85.60 1e-66 Histone H2A.6 OS Arabidopsis thaliana GN RAT5 PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 26 129 104 SSF47113 none none IPR009072
PRINTS 52 67 16 PR00620 none Histone H2A signature IPR002119
PRINTS 109 127 19 PR00620 none Histone H2A signature IPR002119
PRINTS 23 45 23 PR00620 none Histone H2A signature IPR002119
PRINTS 67 80 14 PR00620 none Histone H2A signature IPR002119
PRINTS 81 95 15 PR00620 none Histone H2A signature IPR002119
Gene3D 16 130 115 G3DSA:1.10.20.10 none none IPR009072
Pfam 27 100 74 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
SMART 12 132 121 SM00414 none Histone 2A IPR002119
PANTHER 11 134 124 PTHR23430:SF15 none none none
PANTHER 11 134 124 PTHR23430 none none none
ProSitePatterns 31 37 7 PS00046 none Histone H2A signature. IPR002119

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting