Protein : Qrob_P0350940.2 Q. robur
Protein Identifier  ? Qrob_P0350940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN (PTHR11624:SF64) Code Enzyme  EC:2.2.1.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 679  
Kegg Orthology  K01662
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2).
GO:0016114 terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1053880 1 672 + 672 Gaps:4 93.17 717 80.39 0.0 1-deoxyxylulose-5-phosphate synthase putative (EC:2.2.1.7)
blastp_kegg lcl|pper:PRUPE_ppa002074mg 1 672 + 672 Gaps:1 93.19 720 78.84 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_038364 1 672 + 672 Gaps:12 93.13 713 79.97 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 isoform 1
blastp_kegg lcl|fve:101293163 1 672 + 672 Gaps:3 93.18 718 79.22 0.0 probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic-like
blastp_kegg lcl|mdm:103456158 1 672 + 672 Gaps:6 93.15 715 78.98 0.0 probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic
blastp_kegg lcl|pxb:103927570 1 672 + 672 Gaps:6 93.15 715 78.83 0.0 probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic
blastp_kegg lcl|pop:POPTR_0006s26580g 1 672 + 672 Gaps:9 93.18 718 77.73 0.0 POPTRDRAFT_418371 hypothetical protein
blastp_kegg lcl|mdm:103441443 1 672 + 672 Gaps:6 93.15 715 78.23 0.0 probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic
blastp_kegg lcl|mdm:103410846 1 672 + 672 Gaps:6 93.15 715 78.08 0.0 probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic
blastp_kegg lcl|csv:101227432 1 672 + 672 Gaps:6 93.17 717 76.50 0.0 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic-like
blastp_pdb 2o1s_D 80 661 + 582 Gaps:23 90.98 621 42.48 3e-140 mol:protein length:621 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1s_C 80 661 + 582 Gaps:23 90.98 621 42.48 3e-140 mol:protein length:621 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1s_B 80 661 + 582 Gaps:23 90.98 621 42.48 3e-140 mol:protein length:621 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1s_A 80 661 + 582 Gaps:23 90.98 621 42.48 3e-140 mol:protein length:621 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1x_D 79 659 + 581 Gaps:22 89.83 629 36.46 1e-112 mol:protein length:629 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1x_C 79 659 + 581 Gaps:22 89.83 629 36.46 1e-112 mol:protein length:629 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1x_B 79 659 + 581 Gaps:22 89.83 629 36.46 1e-112 mol:protein length:629 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 2o1x_A 79 659 + 581 Gaps:22 89.83 629 36.46 1e-112 mol:protein length:629 1-deoxy-D-xylulose-5-phosphate synthase
blastp_pdb 3mos_A 421 651 + 231 Gaps:20 38.15 616 28.09 2e-14 mol:protein length:616 Transketolase
blastp_pdb 3ooy_B 421 651 + 231 Gaps:20 38.15 616 28.09 2e-14 mol:protein length:616 Transketolase
blastp_uniprot_sprot sp|O22567|DXS1_ORYSJ 71 677 + 607 Gaps:4 84.86 720 59.57 0.0 1-deoxy-D-xylulose-5-phosphate synthase 1 chloroplastic OS Oryza sativa subsp. japonica GN CLA1 PE 2 SV 2
blastp_uniprot_sprot sp|O78328|DXS_CAPAN 65 672 + 608 Gaps:4 85.12 719 60.13 0.0 Probable 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic OS Capsicum annuum GN TKT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q38854|DXS_ARATH 65 677 + 613 Gaps:4 86.05 717 59.48 0.0 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic OS Arabidopsis thaliana GN DXS PE 1 SV 2
blastp_uniprot_sprot sp|Q6YU51|DXS2_ORYSJ 71 673 + 603 Gaps:4 85.13 713 56.51 0.0 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2 chloroplastic OS Oryza sativa subsp. japonica GN Os07g0190000 PE 2 SV 1
blastp_uniprot_sprot sp|Q130G7|DXS_RHOPS 79 677 + 599 Gaps:15 92.48 638 50.51 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain BisB5) GN dxs PE 3 SV 1
blastp_uniprot_sprot sp|B3QFY7|DXS_RHOPT 79 677 + 599 Gaps:15 92.04 641 50.51 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain TIE-1) GN dxs PE 3 SV 1
blastp_uniprot_sprot sp|Q6NB76|DXS_RHOPA 79 677 + 599 Gaps:15 92.04 641 50.51 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN dxs PE 3 SV 1
blastp_uniprot_sprot sp|Q21A74|DXS_RHOPB 79 677 + 599 Gaps:15 92.04 641 50.34 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain BisB18) GN dxs PE 3 SV 1
blastp_uniprot_sprot sp|Q2IRL7|DXS_RHOP2 79 677 + 599 Gaps:15 92.48 638 50.00 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain HaA2) GN dxs PE 3 SV 1
blastp_uniprot_sprot sp|Q07SR3|DXS_RHOP5 79 677 + 599 Gaps:15 92.19 640 50.34 0.0 1-deoxy-D-xylulose-5-phosphate synthase OS Rhodopseudomonas palustris (strain BisA53) GN dxs PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 400 589 190 SSF52518 none none IPR029061
Pfam 82 366 285 PF13292 "KEGG:00730+2.2.1.7","KEGG:00900+2.2.1.7","MetaCyc:PWY-6891","MetaCyc:PWY-6892","MetaCyc:PWY-7560","UniPathway:UPA00064" 1-deoxy-D-xylulose-5-phosphate synthase IPR005477
SUPERFAMILY 574 674 101 SSF52922 none none IPR009014
Pfam 579 667 89 PF02780 none Transketolase, C-terminal domain IPR005476
PANTHER 305 677 373 PTHR11624 none none none
SUPERFAMILY 325 462 138 SSF52518 none none IPR029061
SUPERFAMILY 79 271 193 SSF52518 none none IPR029061
PANTHER 305 677 373 PTHR11624:SF64 none none none
Gene3D 579 665 87 G3DSA:3.40.50.920 none none IPR009014
Gene3D 97 270 174 G3DSA:3.40.50.970 none none IPR029061
Gene3D 324 395 72 G3DSA:3.40.50.970 none none IPR029061
TIGRFAM 84 664 581 TIGR00204 "KEGG:00730+2.2.1.7","KEGG:00900+2.2.1.7","MetaCyc:PWY-6891","MetaCyc:PWY-6892","MetaCyc:PWY-7560","UniPathway:UPA00064" dxs: 1-deoxy-D-xylulose-5-phosphate synthase IPR005477
PANTHER 94 261 168 PTHR11624:SF64 none none none
Pfam 401 562 162 PF02779 none Transketolase, pyrimidine binding domain IPR005475
Gene3D 400 578 179 G3DSA:3.40.50.970 none none IPR029061
SMART 401 566 166 SM00861 none Transketolase, pyrimidine binding domain IPR005475
PANTHER 94 261 168 PTHR11624 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting