Protein : Qrob_P0350720.2 Q. robur
Protein Identifier  ? Qrob_P0350720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03012 - DNA-directed RNA polymerase II subunit RPB4 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 125  
Kegg Orthology  K03012
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0044237 cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0007s06660g 1 124 + 124 Gaps:14 100.00 138 88.41 2e-80 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s08690g 1 124 + 124 Gaps:14 100.00 138 88.41 2e-80 hypothetical protein
blastp_kegg lcl|vvi:100245383 1 124 + 124 Gaps:14 100.00 138 87.68 7e-80 DNA-directed RNA polymerase II subunit RPB4-like
blastp_kegg lcl|tcc:TCM_001258 1 124 + 124 Gaps:14 100.00 138 87.68 7e-80 RNA polymerase II Rpb4 core protein isoform 1
blastp_kegg lcl|rcu:RCOM_0610380 1 124 + 124 Gaps:14 100.00 138 86.96 5e-79 DNA-directed RNA polymerase II putative
blastp_kegg lcl|cmo:103496636 1 124 + 124 Gaps:14 100.00 138 86.23 1e-78 DNA-directed RNA polymerase II subunit 4
blastp_kegg lcl|csv:101226107 1 124 + 124 Gaps:14 100.00 138 86.23 1e-78 DNA-directed RNA polymerase II subunit RPB4-like
blastp_kegg lcl|csv:101216069 1 124 + 124 Gaps:14 100.00 138 86.23 1e-78 DNA-directed RNA polymerase II subunit RPB4-like
blastp_kegg lcl|crb:CARUB_v10002229mg 1 124 + 124 Gaps:14 100.00 138 84.78 1e-78 hypothetical protein
blastp_kegg lcl|ath:AT5G09920 1 124 + 124 Gaps:14 100.00 138 84.78 1e-78 NRPB4 RNA polymerase II Rpb4 core protein
blastp_pdb 2c35_G 2 124 + 123 Gaps:19 86.84 152 37.88 1e-20 mol:protein length:152 DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEP
blastp_pdb 2c35_E 2 124 + 123 Gaps:19 86.84 152 37.88 1e-20 mol:protein length:152 DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEP
blastp_pdb 2c35_C 2 124 + 123 Gaps:19 86.84 152 37.88 1e-20 mol:protein length:152 DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEP
blastp_pdb 2c35_A 2 124 + 123 Gaps:19 86.84 152 37.88 1e-20 mol:protein length:152 DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEP
blastp_pdb 3h0g_P 6 124 + 119 Gaps:21 94.81 135 32.03 4e-10 mol:protein length:135 DNA-directed RNA polymerase II subunit rpb4
blastp_pdb 3h0g_D 6 124 + 119 Gaps:21 94.81 135 32.03 4e-10 mol:protein length:135 DNA-directed RNA polymerase II subunit rpb4
blastp_uniprot_sprot sp|O48890|NRPB4_ARATH 1 124 + 124 Gaps:14 100.00 138 84.78 5e-80 DNA-directed RNA polymerase II subunit 4 OS Arabidopsis thaliana GN NRPB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9D7M8|RPB4_MOUSE 2 124 + 123 Gaps:19 92.96 142 37.88 4e-20 DNA-directed RNA polymerase II subunit RPB4 OS Mus musculus GN Polr2d PE 2 SV 2
blastp_uniprot_sprot sp|O15514|RPB4_HUMAN 2 124 + 123 Gaps:19 92.96 142 37.88 4e-20 DNA-directed RNA polymerase II subunit RPB4 OS Homo sapiens GN POLR2D PE 1 SV 1
blastp_uniprot_sprot sp|Q54S04|RPB4_DICDI 4 123 + 120 Gaps:31 92.26 155 33.57 9e-17 DNA-directed RNA polymerase II subunit rpb4 OS Dictyostelium discoideum GN polr2d PE 3 SV 1
blastp_uniprot_sprot sp|Q9VEA5|RPB4_DROME 6 118 + 113 Gaps:19 87.77 139 35.25 1e-14 DNA-directed RNA polymerase II 16 kDa polypeptide OS Drosophila melanogaster GN Rpb4 PE 2 SV 5
blastp_uniprot_sprot sp|Q6DBA5|NRPD4_ARATH 21 124 + 104 Gaps:15 57.07 205 33.33 2e-13 DNA-directed RNA polymerases IV and V subunit 4 OS Arabidopsis thaliana GN NRPD4 PE 1 SV 2
blastp_uniprot_sprot sp|O74825|RPB4_SCHPO 6 124 + 119 Gaps:21 94.81 135 32.03 1e-09 DNA-directed RNA polymerase II subunit rpb4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb4 PE 1 SV 1
rpsblast_cdd gnl|CDD|128904 16 124 + 109 Gaps:19 100.00 118 38.14 4e-21 smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
rpsblast_cdd gnl|CDD|202793 23 118 + 96 Gaps:17 97.27 110 29.91 7e-17 pfam03874 RNA_pol_Rpb4 RNA polymerase Rpb4. This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
rpsblast_cdd gnl|CDD|34847 4 124 + 121 Gaps:21 97.10 138 30.60 1e-11 COG5250 RPB4 RNA polymerase II fourth largest subunit [Transcription].
rpsblast_kog gnl|CDD|37562 1 124 + 124 Gaps:18 100.00 134 48.51 2e-33 KOG2351 KOG2351 KOG2351 RNA polymerase II fourth largest subunit [Transcription].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 3 122 120 SSF47819 none none IPR010997
PANTHER 2 124 123 PTHR21297 none none none
Pfam 23 118 96 PF03874 none RNA polymerase Rpb4 IPR005574
SMART 16 124 109 SM00657 none DNA-directed RNA-polymerase II subunit IPR006590

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting