Protein : Qrob_P0330270.2 Q. robur
Protein Identifier  ? Qrob_P0330270.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K12123 - phytochrome E Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1057  
Kegg Orthology  K12123
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0004871 signal transducer activity Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
GO:0000155 phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
GO:0000160 phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO:0018298 protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein.
GO:0009584 detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000491mg 5 1051 + 1047 Gaps:11 92.83 1129 82.16 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325029 5 1051 + 1047 Gaps:9 92.43 1136 81.71 0.0 phytochrome E
blastp_kegg lcl|tcc:TCM_029563 3 1051 + 1049 Gaps:10 92.37 1127 82.13 0.0 Phytochrome E isoform 1
blastp_kegg lcl|rcu:RCOM_0634650 7 1051 + 1045 Gaps:4 92.04 1131 80.31 0.0 phytochrome B putative
blastp_kegg lcl|pxb:103943526 32 1051 + 1020 Gaps:7 90.18 1130 80.08 0.0 phytochrome E-like
blastp_kegg lcl|mdm:103434956 32 1051 + 1020 Gaps:7 90.18 1130 80.18 0.0 phytochrome E-like
blastp_kegg lcl|vvi:100264019 1 1051 + 1051 Gaps:16 93.15 1124 78.22 0.0 PHYE phytochrome E
blastp_kegg lcl|gmx:100808192 6 1050 + 1045 Gaps:15 92.50 1120 76.64 0.0 PHYE1 phytochrome E-like
blastp_kegg lcl|mdm:103446223 32 1051 + 1020 Gaps:7 90.02 1132 79.00 0.0 phytochrome E-like
blastp_kegg lcl|pxb:103951233 32 1051 + 1020 Gaps:10 90.12 1134 79.35 0.0 phytochrome E-like
blastp_pdb 2vea_A 85 582 + 498 Gaps:45 94.81 520 32.86 2e-73 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3zq5_A 85 582 + 498 Gaps:45 94.81 520 32.66 6e-73 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3ibr_B 85 577 + 493 Gaps:82 93.27 505 32.06 1e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3ibr_A 85 577 + 493 Gaps:82 93.27 505 32.06 1e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_B 85 577 + 493 Gaps:82 93.27 505 32.06 1e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_A 85 577 + 493 Gaps:82 93.27 505 32.06 1e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_H 85 577 + 493 Gaps:82 93.27 505 31.85 7e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_G 85 577 + 493 Gaps:82 93.27 505 31.85 7e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_F 85 577 + 493 Gaps:82 93.27 505 31.85 7e-49 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_E 85 577 + 493 Gaps:82 93.27 505 31.85 7e-49 mol:protein length:505 Bacteriophytochrome
blastp_uniprot_sprot sp|P55004|PHYE_IPONI 10 1051 + 1042 Gaps:12 92.38 1115 73.40 0.0 Phytochrome E OS Ipomoea nil GN PHYE PE 2 SV 1
blastp_uniprot_sprot sp|P34094|PHYB_SOLTU 28 1051 + 1024 Gaps:11 91.42 1130 68.05 0.0 Phytochrome B OS Solanum tuberosum GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|P29130|PHYB_TOBAC 8 1051 + 1044 Gaps:18 92.40 1132 67.11 0.0 Phytochrome B OS Nicotiana tabacum GN PHYB PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZS62|PHYB1_SOLLC 4 1051 + 1048 Gaps:14 93.55 1131 66.26 0.0 Phytochrome B1 OS Solanum lycopersicum GN PHYB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q41046|PHY_PINSY 36 1051 + 1016 Gaps:12 90.72 1131 67.25 0.0 Phytochrome OS Pinus sylvestris PE 2 SV 1
blastp_uniprot_sprot sp|P14713|PHYB_ARATH 14 1051 + 1038 Gaps:26 89.76 1172 64.07 0.0 Phytochrome B OS Arabidopsis thaliana GN PHYB PE 1 SV 1
blastp_uniprot_sprot sp|P42498|PHYE_ARATH 14 1051 + 1038 Gaps:29 92.36 1112 66.60 0.0 Phytochrome E OS Arabidopsis thaliana GN PHYE PE 1 SV 2
blastp_uniprot_sprot sp|A2XFW2|PHYB_ORYSI 35 1052 + 1018 Gaps:24 88.81 1171 64.62 0.0 Phytochrome B OS Oryza sativa subsp. indica GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q10MG9|PHYB_ORYSJ 35 1052 + 1018 Gaps:24 88.81 1171 64.62 0.0 Phytochrome B OS Oryza sativa subsp. japonica GN PHYB PE 2 SV 1
blastp_uniprot_sprot sp|P93527|PHYB_SORBI 35 1053 + 1019 Gaps:24 88.37 1178 64.27 0.0 Phytochrome B OS Sorghum bicolor GN PHYB PE 3 SV 2

41 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 761 863 103 TIGR00229 none sensory_box: PAS domain S-box protein IPR000014
TIGRFAM 620 737 118 TIGR00229 none sensory_box: PAS domain S-box protein IPR000014
PRINTS 513 532 20 PR01033 none Phytochrome signature IPR001294
PRINTS 243 262 20 PR01033 none Phytochrome signature IPR001294
PRINTS 428 448 21 PR01033 none Phytochrome signature IPR001294
PRINTS 546 564 19 PR01033 none Phytochrome signature IPR001294
PRINTS 729 749 21 PR01033 none Phytochrome signature IPR001294
PRINTS 616 632 17 PR01033 none Phytochrome signature IPR001294
PRINTS 143 165 23 PR01033 none Phytochrome signature IPR001294
PRINTS 328 349 22 PR01033 none Phytochrome signature IPR001294
PRINTS 635 650 16 PR01033 none Phytochrome signature IPR001294
PRINTS 709 726 18 PR01033 none Phytochrome signature IPR001294
SUPERFAMILY 957 1033 77 SSF55874 none none IPR003594
Gene3D 228 373 146 G3DSA:3.30.450.40 none none IPR029016
ProSiteProfiles 895 1032 138 PS50109 "Reactome:REACT_1046" Histidine kinase domain profile. IPR005467
Pfam 888 952 65 PF00512 none His Kinase A (phospho-acceptor) domain IPR003661
Gene3D 619 731 113 G3DSA:3.30.450.20 none none none
SMART 888 952 65 SM00388 none His Kinase A (phosphoacceptor) domain IPR003661
SMART 228 408 181 SM00065 none Domain present in phytochromes and cGMP-specific phosphodiesterases. IPR003018
SUPERFAMILY 406 585 180 SSF55781 none none IPR029016
SUPERFAMILY 888 944 57 SSF47384 none none IPR009082
Pfam 409 587 179 PF00360 none Phytochrome region IPR013515
SUPERFAMILY 761 863 103 SSF55785 none none IPR000014
ProSiteProfiles 687 743 57 PS50113 none PAC domain profile. IPR000700
SMART 615 682 68 SM00091 none PAS domain IPR000014
SMART 746 816 71 SM00091 none PAS domain IPR000014
Gene3D 955 1033 79 G3DSA:3.30.565.10 none none IPR003594
Pfam 228 397 170 PF01590 none GAF domain IPR003018
ProSiteProfiles 747 825 79 PS50112 none PAS repeat profile. IPR000014
ProSitePatterns 328 337 10 PS00245 none Phytochrome chromophore attachment site signature. IPR013516

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting